Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02195 ATGCCGGCAGAGAGACAAAGATCTCTTTTGAGTTTTTCCATCAAAGATAAGAACAACAATAGAACAAATATGGAATCAAAAGGTGGAGAAGTTAGAAGGCTTCATATAATCTACTTTCTTAGTCACTTAGGTGGTCATGCCGAACATCCTCATCTTATTCGTGTTCTTCATCTTACCCGAAATGGTGTTTATCTTAGAGATATTAAGAGATGGCTTGGTGAATTGAGAGGAAAAGACTTACCTGAATCCTATGCTTGGTCCTACAAGAGGAGGTACAAGAGTGGATATGTGTGGCAGGATTTAATGGATGATGACCTCATAACCCCTATTTCTGATAATGAATATGTCCTCAAAGGATCACAAATCCACACTACCTCTTTTGAAACTCATTCAATTAATTCAGTTAATGAAAAGAAAAATGATACTGATATACTTGTTGAGAAAGTAAAACTTGAAGAGGACGACGAACAAAAGCGGCAAAAGAAACCGTCTTTATCGGAAATTCAGAAAGAAACTGATACAAAAAAGAATAATCTAAATCAAGGGTCATCAGAAATAAGTCAAGATTCATTGGTTTTCAGCTCGGACAGATCATCGGTGACCGATGATGATTCTTGTTCTAAAGTTGAAGAGGAGAAGCTTTTAGGGAATGGAAAAGAAGGTTTAGTTGAAAAGAATCATGACAACAAGTTTGAGGCTTTTTCATTTCCTTCTTTGTATCATAACTTGATGAGCAAGAAAGGTAAAAAAGATGGACATAATAACAAAACCGATACTACACCTCCTGATTCGACGTTTTCTACTCCGACTTCATCAACTTCATCACAATCTCAATCTTCTTTTACTAAGATAAGAAGCAATTCTACTAGAGTTACTAGTGTGTTCAAAAATTGGATTGGTTGTGGAACTGTTGCAACAAATGATGCTGCTTTTCTCTCTATGAATCCTGCTCAGAAAATTCTGTCTAAGGAAAGTAACAATGTGGCTGAAAAAAGGGGTGAGATTTGTAAAGGAGATAAATTGGGAGGGTCAGCTAGGTGTTTTGGGACTCCTTGGAAATATCATGACCAAAATGAACATTATGGAGCAAGAAAAAGCTGTGATGGAGAGGAAATACACAAGGGAAGGAAAAAGCTAAGTGAGTTAATGAGTCAAACTTCTTATAAACCATTTGGTGGACCATTTTGCTCGCAATGTGGAAAATCATTCAAGCCAGAAAAAATGCACAAACACATGAAATCTTGTAAAGGAATGAAAAGCATGGGAACTTCAACTATTGGTGAGGAATCAACAAAGCTTCAAAGATCAACTTCATCATATAAAGATTACCTTTTGCAAAATTAA 1344 0.3609 MPAERQRSLLSFSIKDKNNNRTNMESKGGEVRRLHIIYFLSHLGGHAEHPHLIRVLHLTRNGVYLRDIKRWLGELRGKDLPESYAWSYKRRYKSGYVWQDLMDDDLITPISDNEYVLKGSQIHTTSFETHSINSVNEKKNDTDILVEKVKLEEDDEQKRQKKPSLSEIQKETDTKKNNLNQGSSEISQDSLVFSSDRSSVTDDDSCSKVEEEKLLGNGKEGLVEKNHDNKFEAFSFPSLYHNLMSKKGKKDGHNNKTDTTPPDSTFSTPTSSTSSQSQSSFTKIRSNSTRVTSVFKNWIGCGTVATNDAAFLSMNPAQKILSKESNNVAEKRGEICKGDKLGGSARCFGTPWKYHDQNEHYGARKSCDGEEIHKGRKKLSELMSQTSYKPFGGPFCSQCGKSFKPEKMHKHMKSCKGMKSMGTSTIGEESTKLQRSTSSYKDYLLQN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02195 447 MobiDBLite consensus disorder prediction 153 212 - -
Trre11g02195 447 MobiDBLite consensus disorder prediction 418 447 - -
Trre11g02195 447 MobiDBLite consensus disorder prediction 258 283 - -
Trre11g02195 447 MobiDBLite consensus disorder prediction 245 283 - -
Trre11g02195 447 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 23 431 IPR010369 -
Trre11g02195 447 MobiDBLite consensus disorder prediction 414 447 - -
Trre11g02195 447 MobiDBLite consensus disorder prediction 175 200 - -
Trre11g02195 447 Pfam Protein SOSEKI, plant 35 295 IPR010369 -
Trre11g02195 447 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02195 Trre-Chr11 25649583 25653533 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g02195 DUF966 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02195 - - gmx:100785001 511.916