Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02174 ATGAGTGCTACATTTCAATCATCTCCACCTAATGTAGTTTTGAGTGACATTACATTCAAAAACACATTTGGATATGATGGACCAGCAGTAGCAGCTTCTATATATGGTGATAAGACTGCAATTTTTAAATGTAGTTTCATTGGTTATCAAGATACCTTACTTTCAGCAACAAGACGCCAATACTTTAAAAATTGCTATATTCAAGGTGAAGTAGACTTCATCTGTGGTGATGGTCAATCATATTTTGAGAATTGTGTGATGCATGCCACTCAAGGAAAATCTAGACCTCTAGGTTTTGTAACAGCACAACATAGGGATAAACCCAATGAACCAAGTGGTTATGTTTTTAGAGGAGGGGCAATTGTTGGAAATGGCCAGGTGAATCTTGGAAGACCTTGGGGACCTTATGCAAAAGTTATATTTTGGGGAACATATTTTTCTTCGGTGGTAACTCCTCAAGGATGGACTGCTTGGAATGATTCAATGATAAGCCAAGAGCAAAAGACCACATTTGCAGAAGTTAATTGTAGAGGACCAGGGGCAGACACTAAGGAACGTGTCAAGTGGGAGAAGAAACCAAAAGACTTAAACTTAAAAGAATATACTTTGACATCTTTCATAAATAATGATGGATGGCTTGCCAATATACCATCTATATAA 660 0.3727 MSATFQSSPPNVVLSDITFKNTFGYDGPAVAASIYGDKTAIFKCSFIGYQDTLLSATRRQYFKNCYIQGEVDFICGDGQSYFENCVMHATQGKSRPLGFVTAQHRDKPNEPSGYVFRGGAIVGNGQVNLGRPWGPYAKVIFWGTYFSSVVTPQGWTAWNDSMISQEQKTTFAEVNCRGPGADTKERVKWEKKPKDLNLKEYTLTSFINNDGWLANIPSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02174 219 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 214 - -
Trre11g02174 219 Pfam Pectinesterase 2 209 IPR000070 GO:0030599|GO:0042545
Trre11g02174 219 Gene3D - 1 218 IPR012334 -
Trre11g02174 219 SUPERFAMILY Pectin lyase-like 2 213 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02174 Trre-Chr11 25344838 25347305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02174 3 213 Carbohydrate Esterase AT1G05310 37.838 1.48e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02174 - - mtr:11434724 282.337