Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g02172 | ATGGAACCGACGGTAGATCCGCCACCGGAGATTGAGAACGGAAGACGAAACGAACAAGACGAACAACAACGGTGCAACAAGAAAGCCAAAGTTGTTGATGAAATTGAGAACACGGAATCGATGAAATTGAAACGAGTGGCGGAGATTGTTGATGAAATTGAGAACTCGGAATCAATGGAATTGAAACGACTGGCGGAGATTGTTTTGGTTTTATCAATGATGGCGACGATTCGTGGTGGAAAGAAACCGAGTGATGTTGAAGTTGAGCTTATGAGAGAGGCGAGGAGTAAGCTTGCGGTTCTTTGTCTAAGGATTGCTCCGAAGGATATTGTTGCTGGTGAAGCTATTGGTTCTGTTATTCAGGATATTGGTTTGAATGTTAAGGGTGAGGACCAAAGGTTAGGGTTTCGGACGACGCCTAAGATGTCTATTGCTGAACGGTATTCCTTCGCGAAAACGAAGATGGAGGAATCAAAGAAATTCTCTGCACCTTCTACGACATATACATCTCAGCCCTTGCAAACAAACACCAGTGGAATGGTTGACAATCGCGTGCCAACTAATGCTGTTCGAATGTTTGCGTCTGATAAATCAAACCACACGGCAATATCATCTACAGCTTCCATGGTGTCTATTCCTCCCCATCTTACTGTAGGGTCTTCTGCAGCATTACAATATCAATCAACCAGCAATGAAGTGAGACCGCCCATTGTTTCTGGTGTAATGCCTAACAATCACATTGGAAGAAATCCATCATCTGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGATTGAGTGGGGCTCCTTATGTGCTTCAGGTCCAAGCAAATTCAGTTGCAAATCAATCATTGGCGAATGCTCCTACATGGTCAATACAGACTCAACCTGTGTCATTAGCTAGAAATGTATCAGAAAACAAGGCGCCACCTGCTCATAACTCTGTCAAGGGTGAAGGAACTGCTGGTGCAACTACTATATCAAGGGCAGGTCCACAAGTAACAACAACTCAGAGCATTAGACCATTTATTACTCAAATGGGACCTGGAAATATGTCTAGCATGCACCAGCCATTGCAGGGTGGAAACATGGTTCAACCTCCTATGATTCCTAGTCACTCTGATATTGCAAAGGTTGTTCAGAAATTGTTACTACCGAAGGTTCCTGACCATCCTACATGGACTCCTCCATCAAGGGATTATATGAGTAAGACTTTCACATGTCAGACGTGTGAGCTCCCTGTCAATGAGGTTGATTCTGTTCTAATGTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCAGCGGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGTCCGTGTGATGAGATCCTCAATTACATCACCAAGTTTTCCCTCTAATACAGCTGGTATTCAATCATCTTCAGAGAAGAAAGCAGAGAGCTTAGATTCAAAGGGCAGCCCACAGATGTTTACATCAAATGGAAACTCTGTTCCAACTGTTTCCAGTGCCAATCACAATACTGAGCCGTCATTTGACTCAAATACCCCTGATATGAGAGATATACAAGGTTCCAACTTTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCAAGCATATGTATGAAATCTGCTGTTTGTAGTGCTAACACTGGCTTGCAGGGTGAAAGTTATGCTGAACAAATAGATTCAAAGGCTTTGACCAGTAAAGATACTTCAGAATCTGAAACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAACCAGCACAAAATTCTCAAGCTGGGATAACAGTGTCACACGACAATGCTGAAATATCATCAGATAGACATGTTAGCAGTAGTTTGACAATTAGTAATCAAAAGGAATCTCATGGAGGAGAAAATATAACTTCTGATATCAACCACAATGACCTAGATGTTCCACAACCAAATTCTGTCGGAGTTTCTGGAACTAATACTGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGTTGTACAACTTGTTGATGAGAAAAAGTATTATCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAGGGTCATGCTTTTTTCACATCCCACCATGGCAAATTAACACCTTCTAAACTTCAGTCTTTGTGGGAGGATTCCAAAACTGGGGTGAAGTGGGTTAAGGCAACCAAGTGCTACTTCCCTGATGATTTGCCGGGGAATATCGGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAATAGAAATGGCTAGCTCTATCCGAGGCCCTTGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGACAGAAGATGTCAATTTGGAATTGAGGCAAGTGCTAGTGTACAGCCTATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA | 2547 | 0.417 | MEPTVDPPPEIENGRRNEQDEQQRCNKKAKVVDEIENTESMKLKRVAEIVDEIENSESMELKRLAEIVLVLSMMATIRGGKKPSDVEVELMREARSKLAVLCLRIAPKDIVAGEAIGSVIQDIGLNVKGEDQRLGFRTTPKMSIAERYSFAKTKMEESKKFSAPSTTYTSQPLQTNTSGMVDNRVPTNAVRMFASDKSNHTAISSTASMVSIPPHLTVGSSAALQYQSTSNEVRPPIVSGVMPNNHIGRNPSSVALPRVENPQFKVTGGLSGAPYVLQVQANSVANQSLANAPTWSIQTQPVSLARNVSENKAPPAHNSVKGEGTAGATTISRAGPQVTTTQSIRPFITQMGPGNMSSMHQPLQGGNMVQPPMIPSHSDIAKVVQKLLLPKVPDHPTWTPPSRDYMSKTFTCQTCELPVNEVDSVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYVRVMRSSITSPSFPSNTAGIQSSSEKKAESLDSKGSPQMFTSNGNSVPTVSSANHNTEPSFDSNTPDMRDIQGSNFSSSIETIDEKPDPSICMKSAVCSANTGLQGESYAEQIDSKALTSKDTSESETLPKLSEPAKCENLQPAQNSQAGITVSHDNAEISSDRHVSSSLTISNQKESHGGENITSDINHNDLDVPQPNSVGVSGTNTEGIQHSALSSDSSHAVEWIGDVVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSHHGKLTPSKLQSLWEDSKTGVKWVKATKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRCQFGIEASASVQPIFLCRWFYDEIKKSFQPVIS | 848 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 506 | 541 | - | - | |
| Trre11g02172 | 848 | CDD | BAH | 719 | 846 | - | - | |
| Trre11g02172 | 848 | CDD | PHD_SF | 411 | 459 | - | - | |
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Trre11g02172 | 848 | ProSiteProfiles | Zinc finger PHD-type profile. | 409 | 462 | IPR019787 | - | |
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 161 | 182 | - | - | |
| Trre11g02172 | 848 | ProSiteProfiles | BAH domain profile. | 720 | 847 | IPR001025 | GO:0003682 | |
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 9 | 29 | - | - | |
| Trre11g02172 | 848 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 401 | 475 | IPR013083 | - | |
| Trre11g02172 | 848 | Pfam | PHD-finger | 412 | 460 | IPR019787 | - | |
| Trre11g02172 | 848 | SMART | PHD_3 | 411 | 460 | IPR001965 | - | |
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 482 | 498 | - | - | |
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 482 | 541 | - | - | |
| Trre11g02172 | 848 | SUPERFAMILY | FYVE/PHD zinc finger | 403 | 468 | IPR011011 | - | |
| Trre11g02172 | 848 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 57 | 846 | - | - | |
| Trre11g02172 | 848 | ProSitePatterns | Zinc finger PHD-type signature. | 412 | 459 | IPR019786 | - | |
| Trre11g02172 | 848 | Gene3D | - | 699 | 847 | IPR043151 | - | |
| Trre11g02172 | 848 | MobiDBLite | consensus disorder prediction | 310 | 331 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g02172 | Trre-Chr11 | 25332846 | 25338901 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Trre11g02172 | PHD | 6.2e-07 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g02172 | - | - | gmx:100807139 | 1152.89 |