Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02166 ATGCAGGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTATTTAAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTCAATAGACTTGAGCCATGGGATCTCAAAGATAAATGTAGGATTGGATCAGGGCCACAAAATGAATGGTATTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGGGATAAAGCCATATATCACACTAATTCTAAAAGGATTGGAATGAGGAAAACATTAGTTTTCTATACTGGACGTGCTCCTCATGGCCATAAAACTGATTGGATCATGCATGAGTACCGTCTTGATGATGATGATACTGCTGAAGTTCAGGAAGATGGATGGGTTGTATGCAGGGTATTCAAAAAGAAAAACACAAATAGAGGATACCAACAAGAAATTGAAGAAGATCAAGATCAAATAATTAACCACATGAGATCAACAAATGCAGCTCAAAGCCATTTTCTAGAACCAAAACATAATCATCACCACATGCAACAATTAGGACTATTTGATTACAACAATAACAACACTTTTGATAGTACAATTCATCTACCACAATTATTCAGTCCAGAATCATCAGCTCTAGCACCGCCACCGCCACCGCCGCCGCCAACTTCTTTTCATAATTCATCAATGGATATCCTTGAATGTTCTCAAAACTTATTGAGGCTCACAACAACAACTACTACTCCTAATAATCTCATGCAACAACATCAAGGAGAAAGGTTAATCAGTGGTGGTGATTGGTCATTCTTGGATAAATTACTTGCATCTCACAATGGAATGGATCAGAATCTAAGAAACAAATTATGTAACACTTCTAATAATCATCAAGTTTCAGTTGCTGCTTCTGTTGGATCAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATGATATTATGAAATTTACAAAGTAA 1044 0.3726 MQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDTAEVQEDGWVVCRVFKKKNTNRGYQQEIEEDQDQIINHMRSTNAAQSHFLEPKHNHHHMQQLGLFDYNNNNTFDSTIHLPQLFSPESSALAPPPPPPPPTSFHNSSMDILECSQNLLRLTTTTTTPNNLMQQHQGERLISGGDWSFLDKLLASHNGMDQNLRNKLCNTSNNHQVSVAASVGSTSAQKFPFHYLGCEPHDIMKFTK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02166 347 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Trre11g02166 347 MobiDBLite consensus disorder prediction 226 246 - -
Trre11g02166 347 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Trre11g02166 347 MobiDBLite consensus disorder prediction 229 244 - -
Trre11g02166 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 240 - -
Trre11g02166 347 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Trre11g02166 347 FunFam NAC domain-containing protein 18 163 - -
Trre11g02166 347 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02166 Trre-Chr11 25252826 25255241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02166 1 347 NAC Transcription Factor Family AT1G79580 53.281 2.78e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g02166 NAM 7.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02166 - - gmx:100789606 463.381