Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02165 ATGATGCAGGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTATTTAAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATTAGAGAAGTTGATCTCAATAGACTTGAGCCATGGGATCTCAAAGATAAATGTAGGATTGGATCAGGGCCACAAAATGAATGGTATTTCTTCAGCCACAAGGATAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGGGATAAAGCCATATATCACACTAATTCTAAAAGGATTGGAATGAGGAAAACATTAGTTTTCTATACTGGACGTGCTCCTCATGGCCATAAAACTGATTGGATCATGCATGAGTACCGTCTTGATGATGATGATACTGCTGAAGTTCAGGAAGATGGATGGGTTGTATGCAGGGTATTCAAAAAGAAAAACACAAATAGAGGATACCAACAAGAAATTGAAGAAGATCAAGATCAAATAATTAACCACATGAGATCAACAAATGCAGCTCAAAGCCATTTTCTAGAACCAAAACATAATCATCACCACATGCAACAATTAGGACTATTTGATTACAACAATAACAACACTTTTGATAGTACAATTCATCTACCACAATTATTCAGTCCAGAATCATCAGCTCTAGCACCGCCACCGCCACCGCCGCCGCCAACTTCTTTTCATAATTCATCAATGGATATCCTTGAATGTTCTCAAAACTTATTGAGGCTCACAACAACAACTACTACTCCTAATAATCTCATGCAACAACATCAAGGAGAAAGGTTAATCAGTGGTGGTGATTGGTCATTCTTGGATAAATTACTTGCATCTCACAATGGAATGGATCAGAATCTAAGAAACAAATTATGTAACACTTCTAATAATCATCAAGTTTCAGTTGCTGCTTCTGTTGGATCAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATGATATTATGAAATTTACAAAGTAA 1047 0.3725 MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDTAEVQEDGWVVCRVFKKKNTNRGYQQEIEEDQDQIINHMRSTNAAQSHFLEPKHNHHHMQQLGLFDYNNNNTFDSTIHLPQLFSPESSALAPPPPPPPPTSFHNSSMDILECSQNLLRLTTTTTTPNNLMQQHQGERLISGGDWSFLDKLLASHNGMDQNLRNKLCNTSNNHQVSVAASVGSTSAQKFPFHYLGCEPHDIMKFTK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02165 348 MobiDBLite consensus disorder prediction 230 245 - -
Trre11g02165 348 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Trre11g02165 348 FunFam NAC domain-containing protein 19 164 - -
Trre11g02165 348 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Trre11g02165 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 241 - -
Trre11g02165 348 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Trre11g02165 348 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Trre11g02165 348 MobiDBLite consensus disorder prediction 227 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02165 Trre-Chr11 25252826 25255244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02165 2 348 NAC Transcription Factor Family AT1G79580 53.281 1.52e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre11g02165 NAM 7.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02165 - - gmx:100789606 465.307