Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02164 ATGAAGTATGTGTTGGTGACTGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCTAGTAGTATTGGACTCCTCCTTCAAGCTTGTGGTCTTCGAGTTACTTCTATCAAGATCGATCCCTACCTGAACACTGATGCAGGGACAATGTCTCCTTTTGAACATGGAGAAGTGTTTGTCCTAGATGATGGTGGTGAGGTTGACCTTGATCTTGGAAACTATGAACGTTTCTTGGACATAAAATTAACTCGCGACAATAATATCACTACTGGAAAAATATATCAGTCTGTTATTGAGAAGGAGCGAAGAGGTGATTATCTTGGAAAGACTGTTCAGGTTGTTCCACACATAACAGATGCCATACAAGATTGGATCGAGCGTGTAGCAAAGATACCAGTTGATGGAAAAGAAGGGCCTGCTGATGTTTGTGTCATCGAATTGGGTGGAACTATTGGGGATATCGAGTCTATGCCTTTTATTGAAGCACTCGGCCAATTTTCATACCGTGTAGGCCCTGGCAACTTTTGTTTGGTTCATGTCAGTCTGGTTCCTATTCTTAACGTTGTTGGCGAACAGAAAACAAAGCCAACTCAGCACAGTGTTCGTCAACTTAGAGGATTAGGTTTATTCCCTAATCTTCTTGCTTGTCGCTGTTCAAAGGAACTTGACGATAATACTAAGGCAAAACTTGCTCAATTTTGTCATGTGCCGTTACCAAACGTACTTACTCTCCATGATGTTCCAAATATTTGGCATATTCCTTTGCTATTGAAAGACCAGAAGGCGCATGAATCGATCCTGAAAGCATTAAACCTGCCAGGTGTTGCTGCGGAGCCTAATTTGAAAGAGTGGACTCTTAGGACAAAGATTTATGACAAATGTCATGAAACTGTTAGAATTGCTATGGTGGGAAAGTATACCGGCCTTTCAGATGCATATCTTTCTGTTCTGAAGGCACTTTTGCATGCTTCTGTTGCTCACAATCGTAAACTTATTGTCGACTGGGTTCCAGCTGGTGATCTTGAAGATGTTACATATGGAGAGGATCCTAATGCTTATAGAGCTGCATGGAGTCTTTTGAAGGGTGCTAATGGAGTTCTAGTTCCAGGAGGTTTTGGAGATAGAGGAGTGCAAGGGAAAATTCTTGCTGCTAAGTATGCTCGAGAAAATAATGTTCCATATCTCGGCATTTGCTTGGGAATGCAAATTGCTGTTATTGAGTTTGCACGATCTGTTCTCGGTCTGCATGATGCTACTAGTACAGAATTCGATCCTGAAACCAAGACCCCGTGTGTCATATTTATGCCAGAAGGTTCAAAGACACATATGGGAGGAACTATGCGTCTCGGTTCGAGGACAACTTACTTCCAAGTTGCTGACTGCAAATCTGCAAAACTGTATGGAAATGCAAGCTCTGTTGATGAGCGTCATCGACATAGATATGAGGTTAATCCTGACATGGTATCTCAGCTAGAGAGTGCTGGTCTATCTTTTGTTGGCAAAGATGAAACCGGATGTCGCATGGAGATAGTTGAACTGGCTAGCCATCCTTTTTTTATTGGCGTTCAGTTTCACCCTGAGTTCAAGTCGAGACCAGGGAAACCTTCTCCACTCTTCTCAGGATTAATAGAAGCAGCTTGTGAACCAAAGAGGACAGTTACAATGCTGAGCAACGGCCATGCCAAGTTACCTAACGGAATATATAACAACGGACACTCGCAAATTCTGAAACCACACCAAAATGGAAATGGCTTCATATCATCCAACGGATCCTTAAAAGGCGTATTTGCCAACGGCAATGGAGTGTATGTGGATGGTAGTTGTTAG 1827 0.4275 MKYVLVTGGVVSGLGKGVTASSIGLLLQACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQDWIERVAKIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPILNVVGEQKTKPTQHSVRQLRGLGLFPNLLACRCSKELDDNTKAKLAQFCHVPLPNVLTLHDVPNIWHIPLLLKDQKAHESILKALNLPGVAAEPNLKEWTLRTKIYDKCHETVRIAMVGKYTGLSDAYLSVLKALLHASVAHNRKLIVDWVPAGDLEDVTYGEDPNAYRAAWSLLKGANGVLVPGGFGDRGVQGKILAAKYARENNVPYLGICLGMQIAVIEFARSVLGLHDATSTEFDPETKTPCVIFMPEGSKTHMGGTMRLGSRTTYFQVADCKSAKLYGNASSVDERHRHRYEVNPDMVSQLESAGLSFVGKDETGCRMEIVELASHPFFIGVQFHPEFKSRPGKPSPLFSGLIEAACEPKRTVTMLSNGHAKLPNGIYNNGHSQILKPHQNGNGFISSNGSLKGVFANGNGVYVDGSC 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02164 608 FunFam CTP synthase 1 292 - -
Trre11g02164 608 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Trre11g02164 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Trre11g02164 608 Gene3D - 294 557 IPR029062 -
Trre11g02164 608 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Trre11g02164 608 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Trre11g02164 608 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Trre11g02164 608 PANTHER CTP SYNTHASE 1 552 IPR004468 GO:0003883|GO:0006221
Trre11g02164 608 NCBIfam CTP synthase (glutamine hydrolyzing) 1 545 IPR004468 GO:0003883|GO:0006221
Trre11g02164 608 SUPERFAMILY Class I glutamine amidotransferase-like 297 550 IPR029062 -
Trre11g02164 608 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Trre11g02164 608 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Trre11g02164 608 FunFam CTP synthase 295 559 - -
Trre11g02164 608 Gene3D - 1 292 IPR027417 -
Trre11g02164 608 Pfam Glutamine amidotransferase class-I 309 545 IPR017926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02164 Trre-Chr11 25198538 25203612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02164 K01937 - gmx:100816167 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01671 15 13410435 13416525 Trre11g02164 11 25198538 25203612 PCT