Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02141 ATGGTTCAACTTCCATGCGACTCTAATGGCCACTGCATGGTCTGTAAAAAAAATCCTCCCTACAGGGAAATTTTACCTTGTCGGACATGCGCGACTCCATGGCACGTCCCTTGTCTTCCGATCCCTCCTCCCACCACTTTCTTAGATTGGGACTGCCCAGACTGTTGCCAACCTCAACAAAACAACCATGCTCCGCCTCTCGCCGAAAACCTCATCTCTGCCATTCAAGCCATTCAATCTGATATTTCACTCACCGAGGTAGAAAAGGCAATAAAATGCCAGAAACTTGTAGGTGGATCATCTAAACCACATTCAGATAAAAGTAATGGCGTACTTGATATCTTTGATGGAACCTTAAATTGCTCTTTTTGTATGCAATTACCAGAGAGACCCATCACAACGCCTTGTGGGCATAACTTTTGCCTTAGGTGTTTTGAGAAGTGGATTGGAAAAGGAAAAAATGTGTGCGCTAAATGCAGGAGTTCAATTCCATCAAAGATTTCAAGTCATCCTCGTATTAACTCACAACTAGCGATTGCTATTCGATTAGCAAAATTGGCGAGATCAAAGGGTAACATCGACATTGCAACTAAGAATGCGCATTGTTTTATGCACAATGACGATCGTCCTAACACGGCATTCACTACGGAGCGAGCAAAGAAATCCGGGAAGGCAAATGCATGTTGTGGGAAAATATTTGTTACAATTCCATCTGATCATTTTGGACCAATCCTTGCAGAGCATGATCCGATAAGGAATCGCGGTGTTGTAGTCGGTGACATATGGTTGGATAGGATGGAATGTAGACAATGGGGTGCTCATTTTCCTCATGTTGCTGGAATTGCTGGTCAGGGTAATCATGGCTCACAATCTGTTGCTCTTTCAGGTGGTTACATCGATGATGAGGACCATGGTGAGTGGTTTCTTTACACCGGAAGTGGTGGAAGAGACCTTAGTGGAAACAAGCGTATAAACAAACAACATTCTTTTGATCAAATATTTGATTACATGAATGAGGCATTGAGAGTTAGTTGCCTTAAAGGGTATCCTGTTCGGGTTGTTAGATCCCACAAGGAGAAATGTTCGTTTTATGCACCGGAAGTTGGAGTGCGATATGATGGTATTTATAGAATAGAGAAATGCTGGCGTAAAAATGGAATACATGGTCACAAAGTTTGTAGGTACTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACAAGTGATTTATATGGAGACCGTCCCCGTCCATTGCCTAAAATTAAAGAGTTGAAGAATGCAATTGATATAACTGAAAGAAAGGGTGTTCCATCTTGGGACTATGATGAGGAAAATGGTTGTTGGTTATGGAAGAAGCCTCCACCAAAAAGTAAGAAAATGGCTTCCATTGTGAATCCTATTGATGGAACAATAATAAGAGATTTTAAGCCAAAGACAAAAAGAGTGTCTTTAAAACTAAAAGAGAGGATATTGAAAGAATTTGGTTGCAATATATGTCGCAATGTGTTAGTTTTCCCTCTTACTACTCCTTGTGCTCACAACTTCTGCAAAACATGCTTGGAGGATGCCTTTTCTGGCCAAAGTTACATCAAGAAGAGAGTTTATGAAAATGGACGCACTTTGCGATCATTGAAGAACATTATAAGATGTCCTTCATGTTCTAATGATATTGCTGATTTTCTTCAAAATCCACAGGTTAACAGAGAAATGATGAATGTTATAGAATCACTCCAGCGGCAGACTGAACAAATGGATGCAAGTTCTGAAGAATGA 1776 0.4093 MVQLPCDSNGHCMVCKKNPPYREILPCRTCATPWHVPCLPIPPPTTFLDWDCPDCCQPQQNNHAPPLAENLISAIQAIQSDISLTEVEKAIKCQKLVGGSSKPHSDKSNGVLDIFDGTLNCSFCMQLPERPITTPCGHNFCLRCFEKWIGKGKNVCAKCRSSIPSKISSHPRINSQLAIAIRLAKLARSKGNIDIATKNAHCFMHNDDRPNTAFTTERAKKSGKANACCGKIFVTIPSDHFGPILAEHDPIRNRGVVVGDIWLDRMECRQWGAHFPHVAGIAGQGNHGSQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRINKQHSFDQIFDYMNEALRVSCLKGYPVRVVRSHKEKCSFYAPEVGVRYDGIYRIEKCWRKNGIHGHKVCRYLFVRCDNEPAPWTSDLYGDRPRPLPKIKELKNAIDITERKGVPSWDYDEENGCWLWKKPPPKSKKMASIVNPIDGTIIRDFKPKTKRVSLKLKERILKEFGCNICRNVLVFPLTTPCAHNFCKTCLEDAFSGQSYIKKRVYENGRTLRSLKNIIRCPSCSNDIADFLQNPQVNREMMNVIESLQRQTEQMDASSEE 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02141 591 ProSitePatterns Zinc finger RING-type signature. 512 521 IPR017907 -
Trre11g02141 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 591 IPR013083 -
Trre11g02141 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 74 IPR013083 -
Trre11g02141 591 Pfam Zinc finger, C3HC4 type (RING finger) 119 164 - -
Trre11g02141 591 SUPERFAMILY RING/U-box 476 556 - -
Trre11g02141 591 SMART ring_2 121 159 IPR001841 -
Trre11g02141 591 SMART ring_2 497 554 IPR001841 -
Trre11g02141 591 ProSiteProfiles YDG domain profile. 251 399 IPR003105 -
Trre11g02141 591 SUPERFAMILY RING/U-box 113 165 - -
Trre11g02141 591 SUPERFAMILY FYVE/PHD zinc finger 5 59 IPR011011 -
Trre11g02141 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 587 IPR045134 -
Trre11g02141 591 CDD RING-HC_ORTHRUS_rpt1 119 164 IPR047498 -
Trre11g02141 591 SUPERFAMILY PUA domain-like 225 419 IPR015947 -
Trre11g02141 591 ProSiteProfiles Zinc finger RING-type profile. 497 555 IPR001841 -
Trre11g02141 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 186 IPR013083 -
Trre11g02141 591 SMART PHD_3 11 56 IPR001965 -
Trre11g02141 591 SMART G9a_1 246 403 IPR003105 -
Trre11g02141 591 ProSitePatterns Zinc finger PHD-type signature. 12 55 IPR019786 -
Trre11g02141 591 ProSiteProfiles Zinc finger RING-type profile. 121 160 IPR001841 -
Trre11g02141 591 Pfam RING-type zinc-finger 497 552 IPR027370 -
Trre11g02141 591 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 222 417 - -
Trre11g02141 591 Gene3D - 222 415 IPR036987 -
Trre11g02141 591 Pfam SAD/SRA domain 254 402 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02141 Trre-Chr11 25017037 25022760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02141 2 588 C2H2 Transcription Factor Family AT5G39550 58.431 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02141 K10638 - gmx:100781044 839.721