Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02122 ATGACCAATTCTGAGTGGTCTCAATTTTTGTTCATAAACATCATTTTATTGGCAACCCTTTTCACATGCAACATCAATTTTGCATTTGGAACAGACCCATTTCTTCAACAAAAGAAAGACAGGATTGTTGAGCCACTCCCAGGTCAAAACTTCAACATCAATTTTAAACATTATTCTGGCTATATAACTGTTAACGAGGATGTTGGTAGGACACTGTTTTACTGGTTCATTGAAGCAGATAATGTAGATCCTACTTCAAAACCACTTGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCATCTATTGCTTATGGTGAAGCTGAGGAAATTGGTCCTTTTCATATTAATTCAGATGGCAAAACCCTTTACCTTAATCCTTATTCTTGGAATCAAGTTGCCAACATTCTTTATATTGACTCTCCTACTGGAGTTGGATTTTCATATTCAAAGAATTCATCTGACATTCTCAACAATGGTGATAAGAGGACAGCTGAGGACAATCTCATATTTCTACAGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGAAACCGACTTTTTCATCAGTGGTGAAAGCTATGCAGGACATTATGTTCCCCAACTTAGCCAAGTTATTGTCAAGCACAACTCAGCTACAAAACAAAATTCTATAAATCTGAAAGGTTACATGGTAGGAAATGCTCTAACAGATGATTTCAATGATCAATTGGGGATTTTCCAGTTTATGTGGACAAATGGTATGATTTCGGATCAAACATTCAAGCTCTTGAACCTACTATGTGATTTTCAGTCAGTCGAACATCCGTCAAAATCATGTGAAAAAATCTTGGAAATTGCTGATAATGAATTGGGTAATGTAGATCCATACAGTGTCTTTACCCCTCCTTGCCATGGTAGTGCTAATCAGCGGGTTAAAAGAACGCATAGTGTTGGAAGAATCAGAAGTGTGTATGATCCCTGCACAGAGAAGCACAGCACTATATACTTCAATCGACCTGAGGTCCAAAGGATTTTACATGTTGATCCAGATCATAAGCCTGCTAAATGGGAGACCTGCAAAGTAATGCTCTTCAGTTATTTTTACAAATTTGGATATATTGCTTCATTCAATGTGGTTCTTGCAATACATTTTTTGTTCACTGCTGGACAAGATCAAACACCAAACAAAATGAGTGATGTGGTAGCTATTAACTGGAAGGATTCTCCTAGAACTGTTCTCGATATATATCGTGAACTTATTCCTACTGGACTGCGAATATGGTTTTTCAGTGGTAATACAGATGCTGTAATCCCAGTAACATCTACTCGCTATACCATAGCCGCTCTAAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGATGACGGAGAGGTAGGAGGTTGGACTCAAGAGTATGACGGACTTACGTTTGTAAACGTAAGGGGTGCAGGGCATGAAGTTCCTTTGCATAGACCAAAACTTGCTCTAACATTGTTCAAAGCCTTCTTAGCAGGAACCTCCATGCCAACTCTTGAACCACTCTCACACACCGCTGCCTATTGA 1545 0.3909 MTNSEWSQFLFINIILLATLFTCNINFAFGTDPFLQQKKDRIVEPLPGQNFNINFKHYSGYITVNEDVGRTLFYWFIEADNVDPTSKPLVLWLNGGPGCSSIAYGEAEEIGPFHINSDGKTLYLNPYSWNQVANILYIDSPTGVGFSYSKNSSDILNNGDKRTAEDNLIFLQKWFERFPQYKETDFFISGESYAGHYVPQLSQVIVKHNSATKQNSINLKGYMVGNALTDDFNDQLGIFQFMWTNGMISDQTFKLLNLLCDFQSVEHPSKSCEKILEIADNELGNVDPYSVFTPPCHGSANQRVKRTHSVGRIRSVYDPCTEKHSTIYFNRPEVQRILHVDPDHKPAKWETCKVMLFSYFYKFGYIASFNVVLAIHFLFTAGQDQTPNKMSDVVAINWKDSPRTVLDIYRELIPTGLRIWFFSGNTDAVIPVTSTRYTIAALKLPTVSPWRAWYDDGEVGGWTQEYDGLTFVNVRGAGHEVPLHRPKLALTLFKAFLAGTSMPTLEPLSHTAAY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02122 514 ProSitePatterns Serine carboxypeptidases, histidine active site. 469 486 IPR033124 GO:0004185
Trre11g02122 514 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 486 IPR001563 GO:0004185|GO:0006508
Trre11g02122 514 Gene3D - 405 499 - -
Trre11g02122 514 Pfam Serine carboxypeptidase 47 498 IPR001563 GO:0004185|GO:0006508
Trre11g02122 514 FunFam Carboxypeptidase 405 499 - -
Trre11g02122 514 Gene3D - 320 356 - -
Trre11g02122 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 199 IPR001563 GO:0004185|GO:0006508
Trre11g02122 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Trre11g02122 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Trre11g02122 514 PRINTS Carboxypeptidase C serine protease (S10) family signature 469 482 IPR001563 GO:0004185|GO:0006508
Trre11g02122 514 FunFam Carboxypeptidase 37 298 - -
Trre11g02122 514 Gene3D alpha/beta hydrolase 37 298 IPR029058 -
Trre11g02122 514 SUPERFAMILY alpha/beta-Hydrolases 43 502 IPR029058 -
Trre11g02122 514 ProSitePatterns Serine carboxypeptidases, serine active site. 188 195 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02122 Trre-Chr11 24887486 24897513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02122 416 502 Calmodulin-binding Proteins AT2G22960 26.136 2.09e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02122 K16297 - gmx:100805227 703.36