Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02116 ATGAGTGATGTGGTAGCTATTAACTGGAAGGATTCTCCTAGAACTGTTCTCGATATATATCGTGAACTTATTCCTACTGGACTGCGAATATGGTTTTTCAGTGGTAATACAGATGCTGTAATCCCAGTAACATCTACTCGCTATACCATAGCCGCTCTAAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGATGACGGAGAGGTAGGAGGTTGGACTCAAGAGTATGACGGACTTACGTTTGTAAACGTAAGGGGTGCAGGGCATGAAGTTCCTTTGCATAGACCAAAACTTGCTCTAACATTGTTCAAAGCCTTCTTAGCAGGAACCTCCATGCCAACTCTTGAACCACTCTCACACACCGCTGCCTATTGA 378 0.4524 MSDVVAINWKDSPRTVLDIYRELIPTGLRIWFFSGNTDAVIPVTSTRYTIAALKLPTVSPWRAWYDDGEVGGWTQEYDGLTFVNVRGAGHEVPLHRPKLALTLFKAFLAGTSMPTLEPLSHTAAY 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02116 125 Pfam Serine carboxypeptidase 6 109 IPR001563 GO:0004185|GO:0006508
Trre11g02116 125 ProSitePatterns Serine carboxypeptidases, histidine active site. 80 97 IPR033124 GO:0004185
Trre11g02116 125 Gene3D alpha/beta hydrolase 1 117 IPR029058 -
Trre11g02116 125 SUPERFAMILY alpha/beta-Hydrolases 2 113 IPR029058 -
Trre11g02116 125 FunFam Carboxypeptidase 16 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02116 Trre-Chr11 24772226 24773126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02116 26 113 Calmodulin-binding Proteins AT2G22960 25.843 8.54e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02116 K16297 - tcc:18589023 199.519