Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02103 ATGTTAGGCGGAAAGCCGTTTTATCTGTCAGTATACTGCCATGTTGATCAGACAGGGAGACAGTGCTTTGGGTTCTACATGAGGCGGCACAGGAGGGAGGGAACCATTAGGGTTGATTATGAAATCTCTGCTAGATCCAGACCGGAGGGTTTTGTCAAATTATTTCATGGCGGTGACACATTTACCCCTGAATCGTGTGTGGGATACATAAATCTGTTTGGAGTTTCTTGGAAAGAATTTGTAGCTGAAGATTCTCATTGTGTCGGTAGTTGCAACAAGTTTCTCACATCTCTTCACACAGACAAAACTGAAAAAAAGATGCAATCTTTGGTTTCTGCAAAGTTTCTTTTGCTTGTTGGAGAATCATTCCCTATGAGAAGGGCTTTGTTGAATTCTAGGTTTGCTTGGTTTCATAGTAGTGTTCAATGTATGAGTCAGAACCATCGTGATTCTCTTACCCTTTCAAGCATTGGTGTTAAAAGTGAAAAAATTGAAATTGAAAGTAAATCAAATAAGGTTAAGCCATTAGGTTTAGCTTCTTCTGATGTTTTGAAGAGTAAAAGAAAACCCTTTGGAATTGGTGAAAAGAAAAGTGTTAGGGTTAAAGAGAAACAGAAAATAGATAATGCACCATTTGCTGCTAAGTCATTTTCGGAACTCGGTATTCCGGAAGTGTTGATTGAGAGGCTAGAAAAAGAGGGTTTCAATGTTCCAACTGATGTTCAGTCTGCTGCTGTTCCTACCATTTTGAAGAACCATGATGTTATAATTCAGTCGTATACGGGTTCGGGGAAAACATTGGCTTATCTCCTTCCTATATTGTCTGTTATTGGGCCGTTGAGTGGCGAAAATCATGAAGCTGATGTTGATGGTGGTGAGACTGGGAAGAAATTGGGAGTAGAAGCAGTGATCGTCGCTCCTTCTAGGGAGCTTGGAATGCAGATTGTGAGAGAGTTTGAGAAGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACAAGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACGCCTGGTAGGATAGCCGAGCTCAGTGCAAGTGGGAAGCTTCGCACACACGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAGCTGCTGTCATTCAATTTTCGTGAAGACATGCACAGATTATTGGAGCATGTTGGGAGGAGATCGGGTAGAGACCTAAAATCAAATACTAAAAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCTGTTGTTAGGGCAGCTAAAAGCTGGGGTAGCGATCCGCTTCTTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGTCTCCCGAGCCGGTCAATTTGTCACCGAACTCGAGTCCTAACTCATCTGTGCCATCAAAGGCTGTGGTAGAGAGTCTACCTCCAGCATTGAAACACTATTACTGTGTTGTGAGATTGCAGCACAAAGTTGATACATTGAGAAGGTGTATTCATGCATTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACCAAGCAGCTAAAGGATGTTGTCTTCAAGCTCGAGGCCCGTGGCGTGAAAGCCGCAGAGTTACACGGTGATCTTGGGAAGCTTGGTAGGTCGACAACTCTGAAGAAGTTCAAGAATGGTGAGGTTAGAGTTCTTGTGACAAACGAATTATCAGCAAGAGGTTTAGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCGACTGATTCAATTCACTATGCACACCGAGCTGGTCGAACTGGTCGGCTTGGTAGAAACGGCACAGTGCTAACCATATGTGAAGAGGCAGAGGTTTTTGTTGTGAGAAAATTGCAGAAGCAACTTGAAATACCGATAGCATGCTGTGATTTTGTCGAGGGAAAGCTTCTTGTCACCGAAGAAGAGACTACTCTAAGCAGCGCTTCTTGA 1980 0.4273 MLGGKPFYLSVYCHVDQTGRQCFGFYMRRHRREGTIRVDYEISARSRPEGFVKLFHGGDTFTPESCVGYINLFGVSWKEFVAEDSHCVGSCNKFLTSLHTDKTEKKMQSLVSAKFLLLVGESFPMRRALLNSRFAWFHSSVQCMSQNHRDSLTLSSIGVKSEKIEIESKSNKVKPLGLASSDVLKSKRKPFGIGEKKSVRVKEKQKIDNAPFAAKSFSELGIPEVLIERLEKEGFNVPTDVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLSGENHEADVDGGETGKKLGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGRDLKSNTKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSPNSSVPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEAEVFVVRKLQKQLEIPIACCDFVEGKLLVTEEETTLSSAS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02103 659 Gene3D - 185 449 IPR027417 -
Trre11g02103 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 628 IPR027417 -
Trre11g02103 659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 647 IPR001650 -
Trre11g02103 659 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 215 243 IPR014014 GO:0003724
Trre11g02103 659 CDD SF2_C_DEAD 488 617 - -
Trre11g02103 659 Gene3D - 485 641 IPR027417 -
Trre11g02103 659 Pfam Helicase conserved C-terminal domain 503 608 IPR001650 -
Trre11g02103 659 CDD DEADc 226 448 - -
Trre11g02103 659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 447 IPR014001 -
Trre11g02103 659 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 195 646 - -
Trre11g02103 659 SMART ultradead3 234 466 IPR014001 -
Trre11g02103 659 Pfam DEAD/DEAH box helicase 239 433 IPR011545 GO:0003676|GO:0005524
Trre11g02103 659 SMART helicmild6 527 608 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02103 Trre-Chr11 24344656 24347874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02103 216 642 Eukaryotic Initiation Factors Gene Family AT3G19760 25.635 1.15e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02103 - - gmx:100812968 837.795