Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02097 ATGACAGAATTAGATCCGTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTCCTAGGTGAAGGTACCTATGGTGTTGTTTACAAAGCCATTGATACTCAGACAGGACAGACGGTTGCTATTAAGAAGATTCGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGATCTTAGAGAAATTAAATTGCTTAAAGAACTCAAAGATCCAAATATAATTGAGTTGATTGATTGCTTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGATCGAAATATTTTTCTTTCACCAGGTGACATTAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTCATTGTCACAAAAAATGGGTATTGCATAGGGATATGAAACCAAATAATTTGTTGATAGGACCCAACGGACAGTTGAAACTTGCCGATTTTGGTTTAGCACGTATATTTGGAAGCCCAGATTGCAGATTCACTCATCAGGTATTTGCGCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACTAAGCAGTATGGCCCAGGGGTAGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTTCTTCGTCGACCCTTTTTGCAGGGCTCAAGTGATATCGACCAATTAGGAAAGATTTTCGCAGCATTTGGAACCCCATCTCTTTCTCAGTGTTCTGATATGTTATACTTTCCTGATTATGTTGAATATCAATACGTGCCTGCCCCTCCTTTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAAGAGAGAATTTCAGTGCAGCAGGCATTAGAACACAGATACTTTTCTTGTCCTCCTCCGCCCACAGATCCAGAAAAGCTTCCAAGACCTGCCCCTAAGAGGGAAATTAAGGAATCAGATTTGAATCCACATGAGGGTCCAATTGTCTTATCACCTGCGAGGAAGTCTAGGAGAATAATTCGTGATGGATTTGAAGGGAATTCATTGCAAGGAGATAATATGGATGATAATCATGCTATCCTCAAACAGACAGTTGGTGATAATACAGGGAAGAGTGATCATGCAATGTCGCTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATCAACAGGTAA 1185 0.4025 MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTDLREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAHCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDCRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSLSQCSDMLYFPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKERISVQQALEHRYFSCPPPPTDPEKLPRPAPKREIKESDLNPHEGPIVLSPARKSRRIIRDGFEGNSLQGDNMDDNHAILKQTVGDNTGKSDHAMSLDFSVFGLKPPNRPTINR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02097 394 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02097 394 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Trre11g02097 394 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02097 394 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Trre11g02097 394 SUPERFAMILY Protein kinase-like (PK-like) 10 300 IPR011009 -
Trre11g02097 394 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02097 394 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Trre11g02097 394 FunFam Cyclin-dependent kinase D-1 5 94 - -
Trre11g02097 394 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Trre11g02097 394 MobiDBLite consensus disorder prediction 294 328 - -
Trre11g02097 394 MobiDBLite consensus disorder prediction 306 321 - -
Trre11g02097 394 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Trre11g02097 394 PANTHER CELL DIVISION PROTEIN KINASE 12 298 - -
Trre11g02097 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02097 Trre-Chr11 24277774 24283185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02097 4 393 Core Cell Cycle Gene Families AT1G73690 71.355 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Trre11g02097 Pkinase 4.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02097 K02202 - gmx:100814263 677.552