Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02081 ATGGACCCATCCTCGATCTCTTCACCTCCAGCTCCGGCTCCCAACGCCGTCCCCTTCGCCGTCGAACCAAACAACCACCCTCCTCCTCCACCACCTCCTCATCAATCTCCACCTTCAATTCATCCACCCTATGCCGAGATGATATACACAGCAATTGAAGCTTTGAAAGAGCAAAACGGTTCAAGCAAAAGAGCAATAGCGAAATACATAGAACATGTTTACAAAGACCAACTTCCACCTTCACACACAACCTTGTTGACTCATCACTTAAAGCGTTTGAAATCTGATGGTTTACTTTCTATGGTTAAAAATTCATACATAATTCCTAGATCTACACCTCCTCTTCCTTCTACTTCACCTCCTCAACCTTCAAGACCACGTGGCAGACCCAGAAAACCCCAATCTCAATCTCAACCACTTCCTCCTCCTATTATTGTTACTAATAACAACAACAACTCGGCCCAACAACAACCCCAAAATGCTGAACCTGTTTGGGCCGCACTTGGGCTTGCTGATGAACCATCTGCTGTTTCTGTTTCTGTTTCTGACGGAACTAAAAGAGGTCGTGGCCGTCCTAAGAAAGCTACAGGCCCAAACCCAAGCCCAAGCCCAATTCCAGTACCTACTCAAGAAGGTGGTGCGGTTATTCCGCCAACACCTTCTCGAGGTAGAGGACGTCCGCCTGGTTCTAAAGCTAAATCAAAGAGGAGACCTGGACGTCCAGCCAAGGTGCAGCCGGAGACTACTACTACTACAGCTGCTGCTGCTGCTGCTGTTAGTGGTGGTGCTAAGAAAAGACCGGGGCGTCCGGCGAAGAATCAAAAGCAGAATCCGACTCCGATACCGTTTGCTGCACCTGTGTCTGAAGTGGTAGTGCCGACGACGACGACTGGAGTGGAAGGTGTTGCTGTTTTGACTCCGAGATCTAGAGGAAGACCTAGAAAGAATAATTCTGCTGTTGCTGCTGTCCCTGTTGCTGTTGTTGCTCCTGCTGGGAGAGGTAGAGGACGTGGAAGAGGTCGCGGTGGTGGTGGCCGTGGAAGAGGACGCGGCGGTGTCAGTGTTACTGTTCAGGCTAGACCTACTGGAAAAAGGCCTGTTGGTCGTCCAAAGAAGGGAACAACACCTGCTACTGCTAGTGCTCCAGAAAATGCTGCTAATGAAGATCTCAGAAGGAAACTCGAACACTTTCAAGGAAGAGTCAAGGAATCTCTTGCCTTGCTTAGGCCTCATTTTAACCATGAAAGTCCGGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAATACTCGTAGCCATGGATCTTAATGAACCACTAAAGGATGAACCACTTCCACAGCAACAGAACCTGCCAGTACAAGATCAGCCACCACCGCAGCAGCCACCGCCACAGCAGCCACCACCACAGCAGGTCCCACCACAGCAGTTCCCACCACAGCAGGTGCCACCGCAACATTTTCCAGCACAACAAATCGCGCATGTGCCACAGGTATTTCCGCAATATCCACCATTTCATATTCAGGAGTTCCAATTCCAGCAGCAGCAGCCGCAGCCGCAGCTATACCATCCACCACCACCACAGCAGAACCAGTTTCATCCTTAG 1602 0.5006 MDPSSISSPPAPAPNAVPFAVEPNNHPPPPPPPHQSPPSIHPPYAEMIYTAIEALKEQNGSSKRAIAKYIEHVYKDQLPPSHTTLLTHHLKRLKSDGLLSMVKNSYIIPRSTPPLPSTSPPQPSRPRGRPRKPQSQSQPLPPPIIVTNNNNNSAQQQPQNAEPVWAALGLADEPSAVSVSVSDGTKRGRGRPKKATGPNPSPSPIPVPTQEGGAVIPPTPSRGRGRPPGSKAKSKRRPGRPAKVQPETTTTTAAAAAAVSGGAKKRPGRPAKNQKQNPTPIPFAAPVSEVVVPTTTTGVEGVAVLTPRSRGRPRKNNSAVAAVPVAVVAPAGRGRGRGRGRGGGGRGRGRGGVSVTVQARPTGKRPVGRPKKGTTPATASAPENAANEDLRRKLEHFQGRVKESLALLRPHFNHESPVTAIAAIQELEILVAMDLNEPLKDEPLPQQQNLPVQDQPPPQQPPPQQPPPQQVPPQQFPPQQVPPQHFPAQQIAHVPQVFPQYPPFHIQEFQFQQQQPQPQLYHPPPPQQNQFHP 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02081 533 MobiDBLite consensus disorder prediction 440 533 - -
Trre11g02081 533 CDD H15 41 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g02081 533 Pfam linker histone H1 and H5 family 41 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g02081 533 Gene3D - 37 113 IPR036388 -
Trre11g02081 533 MobiDBLite consensus disorder prediction 518 533 - -
Trre11g02081 533 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 40 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g02081 533 PANTHER HISTONE H1 21 374 - -
Trre11g02081 533 MobiDBLite consensus disorder prediction 330 387 - -
Trre11g02081 533 MobiDBLite consensus disorder prediction 197 213 - -
Trre11g02081 533 MobiDBLite consensus disorder prediction 107 284 - -
Trre11g02081 533 MobiDBLite consensus disorder prediction 141 162 - -
Trre11g02081 533 SUPERFAMILY "Winged helix" DNA-binding domain 38 113 IPR036390 -
Trre11g02081 533 MobiDBLite consensus disorder prediction 450 484 - -
Trre11g02081 533 MobiDBLite consensus disorder prediction 1 43 - -
Trre11g02081 533 FunFam Histone H1.2 37 118 - -
Trre11g02081 533 SMART h15plus2 38 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre11g02081 533 MobiDBLite consensus disorder prediction 113 128 - -
Trre11g02081 533 PRINTS AT-hook-like domain signature 186 196 IPR017956 GO:0003677
Trre11g02081 533 PRINTS AT-hook-like domain signature 219 230 IPR017956 GO:0003677
Trre11g02081 533 PRINTS AT-hook-like domain signature 305 315 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 364 376 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 264 276 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 221 233 IPR017956 GO:0003677
Trre11g02081 533 SMART AT_hook_2 307 319 IPR017956 GO:0003677
Trre11g02081 533 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02081 Trre-Chr11 23548927 23553332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02081 47 113 Single Myb Histone (SMH) Gene Family AT1G49950 46.269 2.36e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02081 - - mtr:25496745 410.994