Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02046 ATGGAGAAAGAATTCCTTGGCTTCAGTTCCAAAAACAGTCCATGGATTTCTATGAAAGAAGATGCTTCCAACAAAACAAAAGAACCAGTGAAGAGTTTAGGAATGCAGTGGTCATTCCCAAATAAGGGTTCAAACCTTCCTCAATTCTTGTCTTTCAAGAACACTCATGAAGATAGGTCAAGAAACACTCTTATGGATCCAATAGCTTCTTCTGGATATATGACTATTTCAACTAAAGATGCTTTTGATTCTAATCAGAAATCATTCTTGGGTGTGACACAGGAAATGGGAAAGCAAGTAGGAAACAAGCATGGAATGACAATTTATCCTTTGCAATCTTCTGATGAACAATTTTCAGTTTCAAATCAATCTAATAATCAAATGGTTAATACAGTTACAAGATCACAATCTTTTGGTTCTAAATCCTCTGCCACACCTGTATCTGTTCTTCCATCAATAGGTTCCATAGTAGGTTCTACTGAATTAAGGAATAGTTCCAAATCCAATGGTACTATGACAATTTTTTATGGTGGTTCAGTATGTGTGTATGATGACATATCTCCTGAGAAGGTTAAAGCTATCATGTTACTAGCTGGAAATGGCACTAATATGCAACAAGAAATCTCTATTCCTACCAAAAAAGATGGTTTCAATATAAGCCAATCATATCCCTCACCATTGCCAAGTTCTCAACCAAGAGGAGGATCAAGTAGCAATAATGAAGTCACAATAATAAGATCTTTAGGACCTTTAGTTACCCCTACCAACACTTTGGAATCTCCTATTGTTGCTACTTCTGTAGGATCTACACCTACTAAAGTGATTCAACATGGCTTGCCTCAAGCACGAAAAGCATCGCTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATATTATATGAGCAAGAAATCACCTGAAAGCAGTACTCCTGGATCAGATAGTGCTAGTTTCTCCATTGACTTCTCTAGTTCAAGTCCTCTACCAGCCACAAACATGCCCTTAAGAAGAACATGTATGGAAGGAATTAGATGA 1050 0.3762 MEKEFLGFSSKNSPWISMKEDASNKTKEPVKSLGMQWSFPNKGSNLPQFLSFKNTHEDRSRNTLMDPIASSGYMTISTKDAFDSNQKSFLGVTQEMGKQVGNKHGMTIYPLQSSDEQFSVSNQSNNQMVNTVTRSQSFGSKSSATPVSVLPSIGSIVGSTELRNSSKSNGTMTIFYGGSVCVYDDISPEKVKAIMLLAGNGTNMQQEISIPTKKDGFNISQSYPSPLPSSQPRGGSSSNNEVTIIRSLGPLVTPTNTLESPIVATSVGSTPTKVIQHGLPQARKASLTRFLEKRKERAMSTSPYYMSKKSPESSTPGSDSASFSIDFSSSSPLPATNMPLRRTCMEGIR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02046 349 Pfam tify domain 170 199 IPR010399 -
Trre11g02046 349 ProSiteProfiles Tify domain profile. 165 200 IPR010399 -
Trre11g02046 349 SMART tify_2 165 200 IPR010399 -
Trre11g02046 349 MobiDBLite consensus disorder prediction 215 241 - -
Trre11g02046 349 Pfam Jas motif 280 305 IPR018467 -
Trre11g02046 349 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 123 317 IPR040390 -
Trre11g02046 349 MobiDBLite consensus disorder prediction 303 337 - -
Trre11g02046 349 MobiDBLite consensus disorder prediction 296 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02046 Trre-Chr11 22942103 22948862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02046 35 310 Tify Gene Family AT3G17860 38.585 7.78e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre11g02046 tify 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02046 K13464 - gmx:100807288 377.481