Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02045 ATGGAGAAAGAATTCCTTGGCTTCAGTTCCAAAAACAGTCCATGGATTTCTATGAAAGAAGATGCTTCCAACAAAACAAAAGAACCAGTGAAGAGTTTAGGAATGCAGTGGTCATTCCCAAATAAGGGTTCAAACCTTCCTCAATTCTTGTCTTTCAAGAACACTCATGAAGATAGGTCAAGAAACACTCTTATGGATCCAATAGCTTCTTCTGGATATATGACTATTTCAACTAAAGATGCTTTTGATTCTAATCAGAAATCATTCTTGGGTGTGACACAGGAAATGGGAAAGCAAGTAGGAAACAAGCATGGAATGACAATTTATCCTTTGCAATCTTCTGATGAACAATTTTCAGTTTCAAATCAATCTAATAATCAAATGGTTAATACAGTTACAAGATCACAATCTTTTGGTTCTAAATCCTCTGCCACACCTGTATCTGTTCTTCCATCAATAGGTTCCATAGTAGGTTCTACTGAATTAAGGAATAGTTCCAAATCCAATGGTACTATGACAATTTTTTATGGTGGTTCAGTATGTGTGTATGATGACATATCTCCTGAGAAGGTTAAAGCTATCATGTTACTAGCTGGAAATGGCACTAATATGCAACAAGAAATCTCTATTCCTACCAAAAAAGATGGTTTCAATATAAGCCAATCATATCCCTCACCATTGCCAAGTTCTCAACCAAGAGGAGGATCAAGTAGCAATAATGAAGTCACAATAATAAGATCTTTAGGACCTTTAGTTACCCCTACCAACACTTTGGAATCTCCTATTGTTGCTACTTCTGTAGGATCTACACCTACTAAAGTGATTCAACATGTAGGCTTGCCTCAAGCACGAAAAGCATCGCTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATATTATATGAGCAAGAAATCACCTGAAAGCAGTACTCCTGGATCAGATAGTGCTAGTTTCTCCATTGACTTCTCTAGTTCAAGTCCTCTACCAGCCACAAACATGCCCTTAAGAAGAACATGTATGGAAGGAATTAGATGA 1053 0.3761 MEKEFLGFSSKNSPWISMKEDASNKTKEPVKSLGMQWSFPNKGSNLPQFLSFKNTHEDRSRNTLMDPIASSGYMTISTKDAFDSNQKSFLGVTQEMGKQVGNKHGMTIYPLQSSDEQFSVSNQSNNQMVNTVTRSQSFGSKSSATPVSVLPSIGSIVGSTELRNSSKSNGTMTIFYGGSVCVYDDISPEKVKAIMLLAGNGTNMQQEISIPTKKDGFNISQSYPSPLPSSQPRGGSSSNNEVTIIRSLGPLVTPTNTLESPIVATSVGSTPTKVIQHVGLPQARKASLTRFLEKRKERAMSTSPYYMSKKSPESSTPGSDSASFSIDFSSSSPLPATNMPLRRTCMEGIR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02045 350 MobiDBLite consensus disorder prediction 299 350 - -
Trre11g02045 350 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 123 318 IPR040390 -
Trre11g02045 350 MobiDBLite consensus disorder prediction 304 338 - -
Trre11g02045 350 ProSiteProfiles Tify domain profile. 165 200 IPR010399 -
Trre11g02045 350 SMART tify_2 165 200 IPR010399 -
Trre11g02045 350 MobiDBLite consensus disorder prediction 215 241 - -
Trre11g02045 350 Pfam tify domain 170 199 IPR010399 -
Trre11g02045 350 Pfam Jas motif 281 306 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02045 Trre-Chr11 22942103 22948862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02045 35 311 Tify Gene Family AT3G17860 38.535 2.05e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre11g02045 tify 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02045 K13464 - gmx:100807288 382.874