Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02043 ATGCAAATGAAGTTTCACAAACTCAAACTCTTGTTCTTTTTTCTGACAATTTTTCTTCCGTCAGTAAAACCTGATTTAACTTCTGAACGCGCTGCTCTTTTAACCCTACGCGCCGCCGTAACCGGCAGAACTCTTCTCTGGAACACGACCTCCGCCACTCCTTGTAACTGGCCTGGTGTCCATTGTGACCAAAACCACACTCACGTAGTCGAGCTTCATCTCCCTGCTGTTTCACTCTCCGGCAAACTTCCCGCCGGCGTGTTCTCCGACCTCCCTAACCTCCACACTCTCAGCCTCCGTTTCAATTCCCTCTCCGGTCCACTTCCTTCTGATCTCTCGGCTTGCACCTCCCTCAAAAACCTCTACCTCCAGCAGAATCTTCTCTCCGGCGAAATTCCGGCGACACTGTTTCAACTCACCGGTCTTGTTCGTCTCAATTTGGCTTCCAATAACTTCTCCGGTAAAATTCCGGTTGGGTTTCAAAACCTAACCCGGTTGAAAACATTATATCTTCAAAACAACCGGTTCACCGGTTCTCTTACTGAGTTGAACCGGGTTCAACTCGATCAGTTCAATGTTTCAAACAACATGTTGAACGGTTCAGTTCCTGAAAAGTTGCAAACTTTTGGTAAAGATTCGTTTTTGGGTAATCTCTTATGTGGGAAACCCCTTAACCCTTGTCCTAAAGAAGGAGGTGTAAATAGTGGAACTGGGGGTGCAAATAGTGGTAATGGAAATTCAACTGTGGTTGATGGAAATCAAGGGTTTGTGAAGAACACGAAGAAAGGAAAATTATCTGGTGGTGCTATAGCTGGAATTATTATTGGGTCTGTTGTGATTCTTTTGTTTCTAGTTTTTGCTTTGATTCTTCTATGTAGGAATAGGAATGGTGAAAAAACTAGTTCAATTGATGATGTTGCAGCAACTTTGAAGCATAATCAGAATGATGAGGAGATTCATGGTGAGAATATTGGAAATGGGTATTCGTCGGCCGCAGCGGTTATAGCTGCGCCGGCGGCGGTGAATGGTGATAGAGGTGGTGAAAGTGTTGTTATTGGTGGTGGAGATAAAAAATTGGTTTTTTTTAGGAATTGGGGTAAGGTGTTTGATTTGGAGGATTTGTTAAGAGCTTCTGCTGAGGTATTAGGGAAAGGGACTTTTGGGACATCTTATAAGGCAGTTTTGGAGGTTGGTCCTGTGGTTGTGGCTGTGAAGAGATTAAGGGATGTGACTATTTCTGAGAGGGAATTTAAGGAGAAGATTGAGAGGGTTGGTGCAATGGTTCATGAAAATTTAGCACCTCTTAGGGCTTATTATTATAGTAGAGATGAGAAGCTTCTTGTTCATGATTATTTGCATATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGAGGTAGGACACCCCTAAATTGGGAAATGAGATCAGGCATTGCACTTGGTGCTGCTCGCGGCATCGAGTACCTACATTCACAAGGACCTAATGTTTCTCATGGAAACATAAAATCATCCAACATTTTGCTAACCAAGTCCTATGATGCAAGAGTATCTGATTTTGGCCTAGCACATCTTGTTGGTCCTTCATCCACACCTAACAGGGTTGCCGGCTACCGTGCTCCCGAAGTAACTGATCCACGGAAAGTTTCTCAGAAGGCAGATGTATACAGCTTTGGTGTATTGCTCTTAGAACTTCTGACTGGGAAAGCTCCAACTCATGCCCTCTTGAACGACGAAGGAGTCGACCTTCTGAGATGGGTGCAATCGGTTGTTAAAGAAGAATGGACTTCTGAGGTCTTCGATCTTGAACTCCTTAGGTATCAAAATGTTGAAGAGGAAATGGTTCAGTTATTGCAACTTGCAGTAGATTGCGCTGCCACTTTCCCCGATAACCGTCCTTCGATGTCGCAAGTGAGACAGCACATTGAAGAGCTGCATAGGTCTAGCTTGAAAGAAAGTCTAGACCAAATTCAACAACCTGATGACATAGATGATAACTCCTCTAGATGA 2013 0.4396 MQMKFHKLKLLFFFLTIFLPSVKPDLTSERAALLTLRAAVTGRTLLWNTTSATPCNWPGVHCDQNHTHVVELHLPAVSLSGKLPAGVFSDLPNLHTLSLRFNSLSGPLPSDLSACTSLKNLYLQQNLLSGEIPATLFQLTGLVRLNLASNNFSGKIPVGFQNLTRLKTLYLQNNRFTGSLTELNRVQLDQFNVSNNMLNGSVPEKLQTFGKDSFLGNLLCGKPLNPCPKEGGVNSGTGGANSGNGNSTVVDGNQGFVKNTKKGKLSGGAIAGIIIGSVVILLFLVFALILLCRNRNGEKTSSIDDVAATLKHNQNDEEIHGENIGNGYSSAAAVIAAPAAVNGDRGGESVVIGGGDKKLVFFRNWGKVFDLEDLLRASAEVLGKGTFGTSYKAVLEVGPVVVAVKRLRDVTISEREFKEKIERVGAMVHENLAPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGGGRTPLNWEMRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNDEGVDLLRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAATFPDNRPSMSQVRQHIEELHRSSLKESLDQIQQPDDIDDNSSR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02043 670 FunFam Probable inactive receptor kinase At1g48480 452 654 - -
Trre11g02043 670 CDD STKc_IRAK 382 646 - -
Trre11g02043 670 Pfam Protein kinase domain 379 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02043 670 SUPERFAMILY Protein kinase-like (PK-like) 380 650 IPR011009 -
Trre11g02043 670 Gene3D Transferase(Phosphotransferase) domain 1 452 668 - -
Trre11g02043 670 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Trre11g02043 670 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Trre11g02043 670 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Trre11g02043 670 Gene3D Phosphorylase Kinase; domain 1 356 451 - -
Trre11g02043 670 ProSiteProfiles Protein kinase domain profile. 376 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g02043 670 FunFam pollen receptor-like kinase 1 347 451 - -
Trre11g02043 670 Pfam Leucine rich repeat 71 128 IPR001611 GO:0005515
Trre11g02043 670 Pfam Leucine rich repeat 132 176 IPR001611 GO:0005515
Trre11g02043 670 Gene3D Ribonuclease Inhibitor 187 227 IPR032675 -
Trre11g02043 670 PANTHER OS05G0588300 PROTEIN 11 650 - -
Trre11g02043 670 SUPERFAMILY L domain-like 46 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02043 Trre-Chr11 22891892 22894413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02043 25 662 Receptor kinase-like Gene Family AT1G48480 57.788 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre11g02043 Pkinase 6.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02043 - - gmx:100781597 851.662