Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02042 ATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTTACTGAACATGATTGCCCTCATTTGCTGTTCTATGGCCCATCAGGCGCTGGCAAGAAGACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCGGGCGCTGAAAAGGTGAAGGTGGAAAATAGGGCGTGGAAAGTGGATGCTGGGAGTAGATCTATTGATTTAGAGCTGACAACATTATCAAGTGCGAATCACATCGAAATGACTCCAAGTGATGCAGGCTTTCAGGACAGATACATCGTACAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATCGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTGCTTAATGATGTTGACAAACTCTCCAGAGAAGCGCAGCATTCTCTCCGCAGAACGATGGAGAAATACAGCGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCAATACGCTCCCGTTGTCTCAATGTACGCATAAATGCACCAAGTGAAGAACAGATAATTGAAGTTTTACAGTTTATTGGTAAGAAAGAAGGGCTGCAACTTCCTCCTAGTTTTGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCTATATTGTCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTCACTGAAAAGCAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCCAAAAGGTTGTTTCTAGTTCGGGGAAAGTTGTATGAGCTGCTGACCAATTGCATTCCGCCAGAGATAATTTTGAAGAGGCTTCTTTATGAGCTATTGAGGAAACTAGATGCAGAACTGAAGCTTGAAGTCTGTCATTGGGCAGCATACTATGAGCATAGGATGCGCCTTGGGCAGAAGGCAATTTTTCACATTGAAGCATTTGTGGCTAAGTTTATGAGCGTCTATAAATCCTTCCTCATTGCAACATTTGGCTGA 1020 0.4186 MVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIIEVLQFIGKKEGLQLPPSFAARIAEKSNRNLRRAILSFETCRVQQYPFTEKQTIPPMDWEEYISEIASDIMKEQSPKRLFLVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02042 339 Gene3D - 175 234 - -
Trre11g02042 339 FunFam Replication factor C subunit 3 237 330 - -
Trre11g02042 339 CDD HLD_clamp_RFC 174 242 - -
Trre11g02042 339 Gene3D - 237 330 - -
Trre11g02042 339 CDD AAA 20 175 - -
Trre11g02042 339 FunFam Replication factor C subunit 5 1 174 - -
Trre11g02042 339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 323 - -
Trre11g02042 339 Pfam DNA polymerase III, delta subunit 3 173 - -
Trre11g02042 339 SUPERFAMILY post-AAA+ oligomerization domain-like 236 331 IPR008921 GO:0003677|GO:0006260
Trre11g02042 339 SMART AAA_5 18 177 IPR003593 GO:0016887
Trre11g02042 339 Gene3D - 1 174 IPR027417 -
Trre11g02042 339 FunFam replication factor C subunit 3 175 233 - -
Trre11g02042 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02042 Trre-Chr11 22861677 22866269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02042 1 339 Core DNA Replication Machinery Family AT5G27740 84.366 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02042 K10756 - gmx:100818329 630.943