Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02041 ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTTGACAATGTTATGGTTCACAACGACATTGCTCAAAATCTCAAGAAATTGGTTACTGAACATGATTGCCCTCATTTGCTGTTCTATGGCCCATCAGGCGCTGGCAAGAAGACACTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCGGGCGCTGAAAAGGTGAAGGTGGAAAATAGGGCGTGGAAAGTGGATGCTGGGAGTAGATCTATTGATTTAGAGCTGACAACATTATCAAGTGCGAATCACATCGAAATGACTCCAAGTGATGCAGGCTTTCAGGACAGATACATCGTACAAGAAATAATCAAAGAAATGGCTAAGAATAGACCCATCGATACTAAAGGGAAGAAAGGATTTAAAGTACTAGTGCTTAATGATGTTGACAAACTCTCCAGAGAAGCGCAGCATTCTCTCCGCAGAACGATGGAGAAATACAGCGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTCACAGAAGCAATACGCTCCCGTTGTCTCAATGTACGCATAAATGCACCAAGTGAAGAACAGATAATTGAAGTTTTACAGTTTATTGGTAAGAAAGAAGGGCTGCAACTTCCTCCTAGTTTTGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCTATATTGTCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTCACTGAAAAGCAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCCAAAAGGTTGTTTCTAGTTCGGGGAAAGTTGTATGAGCTGCTGACCAATTGCATTCCGCCAGAGATAATTTTGAAGAGGCTTCTTTATGAGCTATTGAGGAAACTAGATGCAGAACTGAAGCTTGAAGTCTGTCATTGGGCAGCATACTATGAGCATAGGATGCGCCTTGGGCAGAAGGCAATTTTTCACATTGAAGCATTTGTGGCTAAGTTTATGAGCGTCTATAAATCCTTCCTCATTGCAACATTTGGCTGA 1065 0.4188 MLWVDKYRPKTLDNVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIIEVLQFIGKKEGLQLPPSFAARIAEKSNRNLRRAILSFETCRVQQYPFTEKQTIPPMDWEEYISEIASDIMKEQSPKRLFLVRGKLYELLTNCIPPEIILKRLLYELLRKLDAELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02041 354 Gene3D - 1 189 IPR027417 -
Trre11g02041 354 Gene3D - 252 345 - -
Trre11g02041 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 338 - -
Trre11g02041 354 FunFam Replication factor C subunit 3 252 345 - -
Trre11g02041 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Trre11g02041 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 237 IPR027417 -
Trre11g02041 354 FunFam replication factor C subunit 3 190 248 - -
Trre11g02041 354 CDD HLD_clamp_RFC 189 257 - -
Trre11g02041 354 FunFam Replication factor C subunit 5 1 189 - -
Trre11g02041 354 CDD AAA 35 190 - -
Trre11g02041 354 SMART AAA_5 33 192 IPR003593 GO:0016887
Trre11g02041 354 Gene3D - 190 249 - -
Trre11g02041 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02041 Trre-Chr11 22861632 22866269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02041 1 354 Core DNA Replication Machinery Family AT5G27740 84.463 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02041 K10756 - gmx:100818329 660.988