Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02038 ATGCCATCTTCCTCCCTTTTCACAGTTCCCACCTCTTCAATTCGTTTCCCTTTCTCCTCCACCACAAACCGCTCTCGTTTTAACTCACTTGTCATAGCCAAAGCTGGAAATGATTACTACTCAACTTTGAATCTTAGCAACAATGCTTCTTTGCAAGAAATCAAGACCTCCTACCGGAAATTAGCGCGCAAGTATCATCCAGATATGAATAAAAGCCCAGGAGCAGAAGAGAAGTTCAAAGAGATTAGTGCTGCCTACGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGACTACAAGGAGAAAATGGAGGACCAGCCAGTGCCTCAGGGGTTGATCCTTCTGATTTATTTGATGTATTCTTTGGTCGTTCGGAGGGACTGTTTAACGATGAAGGGGGTTTCAGCTTCAATATGAGAAATAATAGAAACCGTGGTCATGATATTCGGTATGACCTTCGTCTGAGCTTTGAAGAATCTATTTTTGGAGGAAAGAGAAAGGTCGAAGTTTCTTGTTATGAGACATGTAACAATTGTGATGGTACAGGAGCCAAATCAACGAATAGCATTAAAAAATGCACAAATTGTGGTGGCAAAGGAGGAGAGAAGAAAACTCAGAAAACACCGTTTGGAATGATGTCTCAGGTTTCTACCTGCTCCAAGTGTGGTGGTCTCGGCATTATAATCACAGAAAGGTGTCGAAAGTGTGATGGCAATGGTCGTGTGCAAGCTAAACGAAAAATGGAAGTGACCGTTCCTCCTGGTGTCAATGATGGAGACACGATGCAAATTCGTGGTGAAGGGAATTTTGATAAGAAGAGGCGTTATACTGGGGATCTTTTTGTTGTCCTCCATGTTGATGAAAAGCAAGGAATTTGGAGAGAGGGTCTCAATTTATACTCAAAGATTAACATTGACTTCACAGAGGCAATACTAGGGTCTGTTAGAAAGGTAGAAACCGTTGAAGGTTTCAGGGACCTTGAAATTCCTTCAGGGATTCAACATGGACATTCAGTAAAGTTATCACGTTTGGGAGTCCCTGACATGAATAAACCATCTATTCGGGGCGATCATTACTTCGTTGTAAATGTCCTTATTCCTAAAGATATCAGTGGCATGGAACGCGCACTTGTTGAGCAGTTAGCTTCACTGAGAGCATCTAGGAGAGGTCATTCGTTTTCTTCTGATGACAGTGGGATACCTAAAGGAAAATTCAATGATTTCACGCGGAGGGATACAAAAAGTGATGCCTCAAGTGAGGGATCTGAAACTTCAAATCCTCTTTGGGGATCAATCAAGAACATCTTAAGGAGAGGAAACTCTAAAGAAAAGTTTGCATCAATTAGCCATGATACATCAACACTGCTGTGGAGATTTGGCAACCAAAAATATTCAGTCTCACATTCCATTTTTGTTGTTCTATTTATATGTTGGATTTTTAAATCTATAGCAAAGTCCAAGCACTTGTTATTTCATAAAACAACCTAG 1509 0.4082 MPSSSLFTVPTSSIRFPFSSTTNRSRFNSLVIAKAGNDYYSTLNLSNNASLQEIKTSYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGGPASASGVDPSDLFDVFFGRSEGLFNDEGGFSFNMRNNRNRGHDIRYDLRLSFEESIFGGKRKVEVSCYETCNNCDGTGAKSTNSIKKCTNCGGKGGEKKTQKTPFGMMSQVSTCSKCGGLGIIITERCRKCDGNGRVQAKRKMEVTVPPGVNDGDTMQIRGEGNFDKKRRYTGDLFVVLHVDEKQGIWREGLNLYSKINIDFTEAILGSVRKVETVEGFRDLEIPSGIQHGHSVKLSRLGVPDMNKPSIRGDHYFVVNVLIPKDISGMERALVEQLASLRASRRGHSFSSDDSGIPKGKFNDFTRRDTKSDASSEGSETSNPLWGSIKNILRRGNSKEKFASISHDTSTLLWRFGNQKYSVSHSIFVVLFICWIFKSIAKSKHLLFHKTT 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02038 502 CDD DnaJ_C 155 377 - -
Trre11g02038 502 MobiDBLite consensus disorder prediction 410 425 - -
Trre11g02038 502 FunFam Molecular chaperone DnaJ 175 252 - -
Trre11g02038 502 PRINTS DnaJ domain signature 40 58 IPR001623 -
Trre11g02038 502 PRINTS DnaJ domain signature 94 113 IPR001623 -
Trre11g02038 502 PRINTS DnaJ domain signature 58 73 IPR001623 -
Trre11g02038 502 PRINTS DnaJ domain signature 74 94 IPR001623 -
Trre11g02038 502 SUPERFAMILY Chaperone J-domain 37 137 IPR036869 -
Trre11g02038 502 Pfam DnaJ C terminal domain 156 374 IPR002939 -
Trre11g02038 502 MobiDBLite consensus disorder prediction 397 433 - -
Trre11g02038 502 ProSiteProfiles dnaJ domain profile. 38 102 IPR001623 -
Trre11g02038 502 SMART dnaj_3 37 94 IPR001623 -
Trre11g02038 502 CDD DnaJ_zf 183 247 IPR001305 GO:0031072|GO:0051082
Trre11g02038 502 CDD DnaJ 38 91 IPR001623 -
Trre11g02038 502 ProSitePatterns Nt-dnaJ domain signature. 79 98 IPR018253 -
Trre11g02038 502 Hamap Chaperone protein DnaJ [dnaJ]. 35 420 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre11g02038 502 SUPERFAMILY HSP40/DnaJ peptide-binding domain 301 384 IPR008971 GO:0006457|GO:0051082
Trre11g02038 502 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 13 393 - -
Trre11g02038 502 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 293 IPR008971 GO:0006457|GO:0051082
Trre11g02038 502 Gene3D - 183 247 - -
Trre11g02038 502 Gene3D - 297 403 - -
Trre11g02038 502 Gene3D - 153 289 - -
Trre11g02038 502 FunFam Chaperone protein dnaJ A6 chloroplastic 35 141 - -
Trre11g02038 502 ProSiteProfiles Zinc finger CR-type profile. 170 252 IPR001305 GO:0031072|GO:0051082
Trre11g02038 502 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 170 250 IPR036410 -
Trre11g02038 502 Gene3D DnaJ domain 35 139 IPR036869 -
Trre11g02038 502 Pfam DnaJ domain 38 99 IPR001623 -
Trre11g02038 502 Pfam DnaJ central domain 183 247 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02038 Trre-Chr11 22819503 22828097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02038 39 99 C2H2 Transcription Factor Family AT1G74250 43.284 9.16e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02038 K03686 - gmx:100782135 729.554