LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g02030	ATGAGCGGTCGTGGCTGTTGCTTGTGCATGTATTGCACACTCTACGTTGCTATGTTCATTTTGATGATTACTGTTATCGTCTTCTGGATAGTAATCTCTCCCTCAAGTGTGAAATTCCATGTAACCGATGCAACTCTGACCGAGTTCAACCTCACAAACAACAACTTAAATTACAATTTCAAAGTGAACATCACGGTAAGAAACCCCAATAACAACATCATAGTCTATTATCGAGGAATCAAAGCGATTGCTTGGTACAAAGACAACGATTTTAGTCACATAACTTTGACACCCTTTGATCAAGGACACAAGAATACCACTTTTCTTGGACCTATAGAGTTTAAAGGAAATTCTAAGATCAAACTTGGACGTCAACAACTTAAAGAGTATTCCGAAGAGACTAGTCTTGGAATTTATAAAGATTTGGCTGTTGATTTTGATGTTCGAATTAGAGCTAAGTTTGGAAGCTTTTATAAAAGTGGTCGGTTTAATCCACCGGTTGTGCAGTGTCGTCGTTTGAGAGTTCCTTTGGTTTCTTCTTCCAACCGCAACTCATCATCATCAACATTTTCTTTTAGTGTAAAAAGATGCAGCAGTGGTTCTTTCTTTGCAGATCGTGATTTAGATAAAGTAGCTGCTGCAGCTTGA	648	0.3827	MSGRGCCLCMYCTLYVAMFILMITVIVFWIVISPSSVKFHVTDATLTEFNLTNNNLNYNFKVNITVRNPNNNIIVYYRGIKAIAWYKDNDFSHITLTPFDQGHKNTTFLGPIEFKGNSKIKLGRQQLKEYSEETSLGIYKDLAVDFDVRIRAKFGSFYKSGRFNPPVVQCRRLRVPLVSSSNRNSSSSTFSFSVKRCSSGSFFADRDLDKVAAAA	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g02030	215	PANTHER	OS05G0367900 PROTEIN	6	182	IPR044839	GO:0098542
	Trre11g02030	215	Pfam	Late embryogenesis abundant protein	63	163	IPR004864	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g02030	Trre-Chr11	22686145	22686792	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g02030	31	182	SNARE and Associated Proteins	AT1G32270	29.870	2.08e-15	72.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g02030	-		-	gmx:100784278	240.736