LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g02022	ATGTTTTACTTGCCAAAACATGATGAGATTGGAAAAATTCTGAAAGTGGAATGTACTCCCACATTAGGAGAGACAGATGTCTTTGGTTTTTTCAGGCTTGGGTGGCTGCTCCGTTTCATTAGCCATTCTGTAATCTCTGGCTTTACATCTGCTTCAGCTATTGTGATTGGTTTATCTCAAGCAAAGTACTTTTTGGGGTACGATATAGACAGAAGTAGCAAGATTATACCGTTAGTTAAAAGTATAATAGCTGGAGCTGATAAGATGCCAAATAAAGCTACAGAAAAGGCTTCCAAGAATCATAAATTAAAACATCTCAAACGTTCAAGTCAACAAATGTCATCTCATGATGCAACTCCTCATACTATGCCATCAACTACTAGGACATCTAATGGCACACACACTAATACTGCTCCTCATATAAGGGAGTCTGCTGCTAGGACATCTAATGACCCTCCTCCTCACGTTGCAACTGCATCTAGGACATCTAATATCCCACCTCCTGAAGTTGCATCTACTGTTAGGACATCAAATGTTCCACATCATCATGTTCCTCATGCTTCATGTGCTACTAGGACATCAAATATCATACCTCCATTTAGTTCACAACCATGTGATTCTGAGACACAAAGTAGTGGCGGAAAGCAAACTTTAATACTTGAGTTACAGGGATTTTTGCCTTCGTATGCTGCAGCTAATGAGATTGGAGATATCATGAGGAGTAATTATAGTCAGCCATGGTACTCATGGAAAAAGATAGACACTGACACAATAGACTTATGGTTTAAAGCTTTTAAGACAAAGTTTAAATTTTGTCCGCCGAATGATGCATGGGCTAGAAAGAACTTTGAAAGACGAGGTGCAGCAATAATGAAAAATAACTTAAGCAAGGTTCGTCTCGCAAGGAAAAGACCAAGTTGGATTTCTCAAAAACTGTGGAAGACATTAAATGAGCATTGGAAAACTCCAGATTATAAAAAGAAGCGTATGCAGGCGAAAACAAATAGAGCATCTGACCGTGACGGTTTTGGAAAGCCCCTTCACACTTGTGGCTCTATCACCACATCACAACATAGAGCTAATTTGACGGAAACGAATGGCACTCCCCCCCGATCCCGTAGATTTGTTTGTTTACACACACCAACATCGCAAGAATAA	1158	0.3981	MFYLPKHDEIGKILKVECTPTLGETDVFGFFRLGWLLRFISHSVISGFTSASAIVIGLSQAKYFLGYDIDRSSKIIPLVKSIIAGADKMPNKATEKASKNHKLKHLKRSSQQMSSHDATPHTMPSTTRTSNGTHTNTAPHIRESAARTSNDPPPHVATASRTSNIPPPEVASTVRTSNVPHHHVPHASCATRTSNIIPPFSSQPCDSETQSSGGKQTLILELQGFLPSYAAANEIGDIMRSNYSQPWYSWKKIDTDTIDLWFKAFKTKFKFCPPNDAWARKNFERRGAAIMKNNLSKVRLARKRPSWISQKLWKTLNEHWKTPDYKKKRMQAKTNRASDRDGFGKPLHTCGSITTSQHRANLTETNGTPPRSRRFVCLHTPTSQE	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g02022	385	MobiDBLite	consensus disorder prediction	151	179	-	-
	Trre11g02022	385	Pfam	Plant transposase (Ptta/En/Spm family)	310	371	IPR004252	-
	Trre11g02022	385	Pfam	Sulfate permease family	27	89	IPR011547	GO:0016020
	Trre11g02022	385	MobiDBLite	consensus disorder prediction	112	144	-	-
	Trre11g02022	385	MobiDBLite	consensus disorder prediction	90	186	-	-
	Trre11g02022	385	PANTHER	SULFATE TRANSPORTER	27	85	IPR001902	GO:0016020\|GO:0055085
	Trre11g02022	385	MobiDBLite	consensus disorder prediction	361	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g02022	Trre-Chr11	22633453	22638065	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g02022	27	89	Inorganic Solute Cotransporters	AT5G13550	80.952	3.45e-26	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g02022	-		-	tpra:123913621	309.686