Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02013 ATGGCAACAAGAACAGACCACCGTGTTTTGAATGGAACACATCACAGTAACAACTCTGTTTGTGCTGCAAAAAGAACAACAACCACAGAGAACAGAGCACCGTCAGCGAACGCGCACAGAGCACAACTACGGCGAACCCGCAGACCATTGCAGAACACCTTCAACTCCGGGACACAAAAATTCAGACACAGCTTCAACAACAATCTAAGCATTTCTCGAAGTGCTGTTTCTGAATTCTGTTCCTCTTCTTGTCAGAAGGAACATTTGAAAGGAATGAGCTTGCAGTTACGAAAAGAGAGGAGGGAAGGGGGGTCGAGGTTCCCACCACAACGTGCTCCTCGTCAAGAATGGGTTCCGAAAGGAACTGGAACATCCACCACCACCTCCACCACTGCTCCCACAACCACCGCCACCACAGTTGTTGTCAACCCTACAAGTTTGCACTCTCGTCAGAAGAACACTAATGGTGATGGTGGTTCGTCCAGTCAAGGATCTGTTGTTGCTCCTCCGTTGGCTAGGCATAGAAGTAATCATCATGTTACTCATCGTGTGGAAAGAGAACATGTTGGTCATCAGGTAGAAAGGGAACATGTTGCCCATAGGGTGGAAAGGGAACATGTTGCTCATCAAGTGGAAAGGGAAAATGTTGCTCATCGGGTTGAAAGGGAAAATGTTGCTCATCGGGTGGAAAGGGAACATGTTGCTCATCGGGTGGAAAAGGATAAAGGGAGGAGTGGTAATATGGCCGGGAGGGAATATGGATCGAGGGACTCTAGTTTGCCTCAATTGGTGCAGGAGATTAAGGAGAAGCTCACAAGAGGAACAGTGGAGTGCATGATTTGCTATGATATGGTTCGTAGGTCTGCGCCTATTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTGAATTGTATCAAGAAGTGGGCTCGTGCTCCCACCTCGGTTGATTTATCGGCGGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTCGTGCAGCATACATCTTCAAGGGATATTAAGTATGTTTGCTTTTGTGGGAAGAGGACAGACCCTCCGCATGATTTGTATCTGACACCTCATTCATGTGGTGAGCCATGTGGGAAGCCTCTTGAGAAGGAGGTGTTGTCTACTGAAGGGAGAAAGGACCAGCTTTGCCCCCATGCTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGTCCTTGTGGAAAGAAAAGAATTGCCACCCGTTGCTCTGATCGGCAGTCTGATCTTACCTGTGGTCAGCGCTGTGATAAGCTTCTTAATTGCGGACGACATCGCTGTGAAAATGCTTGCCATGTGGGTCCTTGCGATCCTTGTCAGGTGCTAATCAATGCCTCTTGCTTTTGCAGTAAAATGATGCAGGCTATTTTTTGTGGAGAGATGGCTATGAAAGGTGAATTTAAAGTAGAAGATGGAGTTTTTTCTTGTGGTTCTAATTGTGGAATGGAACTTAGTTGCGGTAATCATATCTGCCATGATGATTGTCATCCAGGCGGCTGCGGTGAATGTGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGGAAAACAAAGTTGGAGGACGAACGGAAGAGTTGTTTGGATCCGATACCTACATGTTCACAAGTATGTGGCAAGCTCCTTCCTTGCGGGATACATGCTTGTAAGGAGCCATGCCATGTTGGGGAATGTCCACCATGTCAGGTCCTAATTTCACAGAAATGCCGTTGTGGCTCAACTTCGCGAACTGTTGAATGCTATAAAACATTAATGGAAAATCAGAAATTTACTTGTGAAAAGCCTTGTGGGGCAAAGAAGAATTGTGGAAGGCATCGATGTAGTGAAAAATGTTGTCCATTGTCTGGTCCAAATAAGAACTTGACTATTGCGGATTGGGATCCTCACTTTTGTTCCATGCTTTGCGGAAAGAAACTAAGATGTGGCCAGCATGTATGCGAAACGTTGTGTCACAGTGGTCATTGCCCACCGTGTCTTGAAACAATCTTCTCCGATTTAACATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTATGTCAACTTCCATGTTCAGTTCCTCAGCCGTGTGGTCATTCGGGCTCTCATAGTTGTCATTTTGGAGATTGTCCTCCTTGTTCGGTACCCGTGTCGAAAGAATGTGTCGGTGGCCATGTCATTCTTAGGAATATACCTTGTGGCTCAAACAATATTAGATGCAATAATCCATGTGGAAGGACTAGACAATGCGGTTTACATGCATGTGGAAGACCATGTCACTCACCACCTTGTGATACTCTACCTGATTTTGTGAAAGGACACCGAGCGCCGTGTGGGCAGACATGTGGTGCTCCAAGGAGTGGCTGTCGACATATGTGTATGGCTCAATGTCACCCTACTATGTCTTGTCCTGATGTAAGATGTGAGTTCCCCATTACAATTACTTGCTCTTGTGGCCGCATATCAGCTAATGTTCCTTGTGATGTTGGTGGTAGCAATAGTAATTATAATGCTGATGCAATTTATGAAGCTTCCATTATTCAAAAATTGCCCGCGCCACTTCAACCGGTTGATGCTAACGGCCAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGAGGAATGTGCTAAGTTGGAACGTAAAAGGGTTCTTGCCGATGCCTTTGACATCACTCCAAGTCTTGATGCTCTCCATTTCGGTGAGAATTCTTCTTTTGAATTGCTTTCTGACTCATTTAGACGTGATCCAAAGTGGGTTTTGGCTATTGAAGAGAGATGCAAAATATTAGTTCTTGGGAAAAGCAAAGGAACTACACATGGTTTAAAAGTCCATGTCTTTTGCCCAATGATAAAAGATAAAAGAGATGCCGTGAGATTGATTGCTGAAAGATGGAAGCTTGTAGTGAATGCTGCCGGTTGGGAACCGAAACGATTTATCGTAATTTCTGCTACTCAAAAATCTAAGGCCCCAGCTCGTGTGCTCGGTGTTAAGGGTACCACAACTTTAAACGCGCCACTTCCTACTGCATTTGATCCCTTGGTTGATATGGACCCAAGGCTTGTTGTATCGTTTCCAGACTTGCCAAGGGACGCTGATATTAGTGCATTGGTGTTGAGATTTGGCGGTGAATGTGAGCTTGTTTGGTTAAACGACAAAAATGCTTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCGATGAGGAGATTGGATCACGGAACAGTTTATCAGGGTGCTGTTTCTTTTGTCCAGAATGCCGTATCATCGGCGGTGTCTTCAGTTACCAATGCATGGGGAGGTATGAAAGATGGAGGAGGGCTGTCAACACTGAAAAGTAATCCATGGAAAAAGGCGGTGGTTCTCGACGCGGGTTGGAAAGAAGATTCATGGGGTGATGAACAATGGGCTGCCGGTGGTTCTGCAAATATCCAACCATCAGTTTTGAAGAAAGAAACGCCAATACCTGCTTCATTGAATCCTTGGAATGTTTTAAACCAGGAATCGAGTTCGAGTTCATCACCTACAACCGTCATGAAAAGTTTACCTTTTGGAAAACAAACTGAAAGCGGCAATGTCTCAACTAGGGTGGAGTCTTCTTCAGGCGGCGCAAATGGAGGAAACTTTGATGTAAGAGATGCTTCTGAAGTTGTAGATGATTGGGAGAAGGCTTTTGAATGA 3759 0.4565 MATRTDHRVLNGTHHSNNSVCAAKRTTTTENRAPSANAHRAQLRRTRRPLQNTFNSGTQKFRHSFNNNLSISRSAVSEFCSSSCQKEHLKGMSLQLRKERREGGSRFPPQRAPRQEWVPKGTGTSTTTSTTAPTTTATTVVVNPTSLHSRQKNTNGDGGSSSQGSVVAPPLARHRSNHHVTHRVEREHVGHQVEREHVAHRVEREHVAHQVERENVAHRVERENVAHRVEREHVAHRVEKDKGRSGNMAGREYGSRDSSLPQLVQEIKEKLTRGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRTDPPHDLYLTPHSCGEPCGKPLEKEVLSTEGRKDQLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLLNCGRHRCENACHVGPCDPCQVLINASCFCSKMMQAIFCGEMAMKGEFKVEDGVFSCGSNCGMELSCGNHICHDDCHPGGCGECEFLPSRVKTCCCGKTKLEDERKSCLDPIPTCSQVCGKLLPCGIHACKEPCHVGECPPCQVLISQKCRCGSTSRTVECYKTLMENQKFTCEKPCGAKKNCGRHRCSEKCCPLSGPNKNLTIADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFSDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRPCHSPPCDTLPDFVKGHRAPCGQTCGAPRSGCRHMCMAQCHPTMSCPDVRCEFPITITCSCGRISANVPCDVGGSNSNYNADAIYEASIIQKLPAPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDSFRRDPKWVLAIEERCKILVLGKSKGTTHGLKVHVFCPMIKDKRDAVRLIAERWKLVVNAAGWEPKRFIVISATQKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNAVSSAVSSVTNAWGGMKDGGGLSTLKSNPWKKAVVLDAGWKEDSWGDEQWAAGGSANIQPSVLKKETPIPASLNPWNVLNQESSSSSSPTTVMKSLPFGKQTESGNVSTRVESSSGGANGGNFDVRDASEVVDDWEKAFE 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02013 1252 Pfam NF-X1 type zinc finger 721 738 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 664 681 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 774 789 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 625 636 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 392 407 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 509 526 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 445 463 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 Pfam NF-X1 type zinc finger 567 585 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 CDD NF-X1-zinc-finger 557 605 - -
Trre11g02013 1252 SMART znfxneu3 567 586 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 509 528 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 390 408 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 625 656 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 664 683 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 813 834 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 774 804 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 721 739 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 SMART znfxneu3 445 464 IPR000967 GO:0005634|GO:0008270
Trre11g02013 1252 CDD NF-X1-zinc-finger 435 483 - -
Trre11g02013 1252 MobiDBLite consensus disorder prediction 99 179 - -
Trre11g02013 1252 MobiDBLite consensus disorder prediction 1192 1232 - -
Trre11g02013 1252 CDD RING-CH-C4HC3_NFX1-like 277 334 - -
Trre11g02013 1252 MobiDBLite consensus disorder prediction 236 257 - -
Trre11g02013 1252 MobiDBLite consensus disorder prediction 1192 1252 - -
Trre11g02013 1252 CDD NF-X1-zinc-finger 367 428 - -
Trre11g02013 1252 ProSiteProfiles Zinc finger PHD-type profile. 275 336 IPR019787 -
Trre11g02013 1252 SUPERFAMILY RING/U-box 269 338 - -
Trre11g02013 1252 CDD NF-X1-zinc-finger 711 759 - -
Trre11g02013 1252 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 136 1160 IPR034078 GO:0003700
Trre11g02013 1252 CDD NF-X1-zinc-finger 499 544 - -
Trre11g02013 1252 ProSiteProfiles Zinc finger RING-type profile. 278 334 IPR001841 -
Trre11g02013 1252 CDD NF-X1-zinc-finger 654 706 - -
Trre11g02013 1252 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02013 Trre-Chr11 22437149 22443558 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Trre11g02013 zf-NF-X1 0.53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02013 K12236 - gmx:100789059 1656.73