Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01960 ATGGCTTATGAGTTCTACAACCGGTATGCTAGAATGAATGGGTTTGCAGTCCGCAAGGGCAAGATACTCCGAAGCAAGAAAGGGGAAATACTACAACGAAATTTTGTCTGCCACAGACAAGGGTTTAGGGAGGATAGAGGTTTAACAATAGAAAATCGTAAGCGTGAGCGTAAACCCGAGACTCGGTCTGGATGTGAAGCGAAATTTAGAGTTCATATAGATATTTTTTCACAACGTTGGCAGATAACTGTTTTTACAGATCAACATAACCATGATCTTTTGGATGAAAAGTACTGTCGAATGCTTCCTGCACATCGAAGAATGAAAGAGTCAGATACAGTGCAGTTGAACGATATGTTGAAGGGTGGTATAGGCCTGTCTCAATTCTATGCTTCTATGGCGAACCAAGCAGGAGGTTATGAAAAAATTGGGTTTCGTAGGAAGGATATATATAATCAAATAGGAAAACAACGCCGTTTGAAACATTGTGATGGTAAAAATGCTATACACTATCTTCGTGGGCTGGCATCCGATGACCCGATGATGTTTTATCGCCACACCGTTGATGGCGAAGGCAAGCTTGAACACCTGTTTTGGTGTGATGGTATTAGCCAAATGGATTACCAAGTTTATGGTGATGTGTTGGCATTTGATGCAACCTATGGAAAGAATAAATATCACTGCCCCTTAGTGGTATTTTCTGGTGTTAATAACCACAATAACAATGTTATATTTTCTGGTGCTATTGTTGCAAATGAAAAAGAAGAAACGTATGTGTGGGTTCTTGAACAATTTTTGGAAGCAATGTTAGGCAAGTCACCTATATCTGTCATTACTGATGGCGATCTTGCAATGAAGAATGTTATTAAAAGGGTATTTCCGAATGCATATCATAGATTGTGTGCTTGGCATCTAAGTCGTAATGCAACGTCTAACATCAGAGATTCTGAATTTGTCGGTCAATTCAGGAAATGCATGTTGAGGGACTATGACTTGGGTGAGTTTCGACGCAAATGGACTGAAATGGTTGACGCATTTGGGTTGCATGACAACAAGTGGATTGCAGAACTGTATGCAAAGAGAAAGATGTCGGCTTCAGCTCATATACGTGGAAATTGTTTTGCTGGGTTCAGAACTACCTCCCGGTGTGAGGGGTTACATTCAGAAATTGGAAAGTTTCTTCACTCACGATATAATTTGAGCGATTTTTTACTACATTTTCATTGA 1227 0.3993 MAYEFYNRYARMNGFAVRKGKILRSKKGEILQRNFVCHRQGFREDRGLTIENRKRERKPETRSGCEAKFRVHIDIFSQRWQITVFTDQHNHDLLDEKYCRMLPAHRRMKESDTVQLNDMLKGGIGLSQFYASMANQAGGYEKIGFRRKDIYNQIGKQRRLKHCDGKNAIHYLRGLASDDPMMFYRHTVDGEGKLEHLFWCDGISQMDYQVYGDVLAFDATYGKNKYHCPLVVFSGVNNHNNNVIFSGAIVANEKEETYVWVLEQFLEAMLGKSPISVITDGDLAMKNVIKRVFPNAYHRLCAWHLSRNATSNIRDSEFVGQFRKCMLRDYDLGEFRRKWTEMVDAFGLHDNKWIAELYAKRKMSASAHIRGNCFAGFRTTSRCEGLHSEIGKFLHSRYNLSDFLLHFH 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01960 408 PANTHER OS01G0519700 PROTEIN 2 407 - -
Trre11g01960 408 Pfam FAR1 DNA-binding domain 4 94 IPR004330 -
Trre11g01960 408 Pfam MULE transposase domain 214 308 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01960 Trre-Chr11 19879918 19881144 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g01960 MULE 1.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01960 - - tpra:123913749 791.186