Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01952 ATGTGGTTGTTATTTCATTCAGAAGCTTATGAACCATTTGACCCATATGGAAATATCACAATCAAATGGGACGTTATAGCCTGGAATGATGGTGACGAGGGTTATGTTATAAAAAACTTTCAACAGTATCGACATATCCTGAGTCCAGGATGGTCGTTGGGATGGGCATGGAAAAACCACGAGGTGATAAGGAGCTTGATGGGAGCACAGGCAACAGAAAAAGAAAATTGTTCGAAATTTGGAGGGATAACAGTAGTTTCCTGTAAAACACATCCCACAATCATAGATTCAATTCCCGGAGATGTTGATGAAAAAGATGTTGAAAATTGCTGCAAAGGTGGTGTACTTAGTGCATGGTCACAAGATCCAACAAAAGCTGTTTCATTATTTCAAATCAACGTAGGAGTTAACCACCCTCGCAAAACTTTAAAGGTGCCGCCGCAGAACTTCACCTTTAAAGTACCAGGACAAGACTATACTTGTGAACCGACAAAAATCGTGAAACCAACTCGCTATACATACAAAAAGATGGTATCACATGCATTCATGACATGGACTGTGAAATGCACATTTTCAGAATTTCTAACTAAGAAAACTCCAAAATGTTGTTTATCACTCTCATCTTTCAACAGTGATACTACTGTACCCTGTAGTACATGTTCGTGCGGCTGCGAAGAAAACTCAACTGAATCAACATGTTTAGATCCAACTGCGCCGATTAGTAACACCGTTGGAGAGAATGATGACAATCCTTCGGTTCAATGTACACCCCATATGTGTCCCATACAAGTAAACTGGCATATTAAGGAAAACTACAAGGAGTATTGGCGAGTAGAGATCACAATTACGAACTATAATTGTTTGGTGAATTATACGGATTGGAGTTTGATTGTTCAACATCCAAATTTTGACAATCTGACTCAATCTTTGGGTTTCAATTACAAATCAATATCCACTAACGAGTTGTTAAATGATACAACATTGTTGTGGGGAGTTAAAACCTACGATAATTTACTAATGGAAGCTGGTCGTAATAGCGGCGATGTACATGCGGAGTTACTATTTCACAAGCATAAATATTTTTCTTTGTCAAATGGTTGGGCGTTTCCTTGGAGGGTCTATTTCAATGGTGATAATTGTGCGATGCCACCACCTGGTGTTTATCCTCATGATAATCCATTAACTGATATCGGGTCTAAGCAAGAGGTTTCCCTGTTTATCAATGTACTTGTGTTGGTTGTTTTAATCGTTATCATTTGA 1260 0.3857 MWLLFHSEAYEPFDPYGNITIKWDVIAWNDGDEGYVIKNFQQYRHILSPGWSLGWAWKNHEVIRSLMGAQATEKENCSKFGGITVVSCKTHPTIIDSIPGDVDEKDVENCCKGGVLSAWSQDPTKAVSLFQINVGVNHPRKTLKVPPQNFTFKVPGQDYTCEPTKIVKPTRYTYKKMVSHAFMTWTVKCTFSEFLTKKTPKCCLSLSSFNSDTTVPCSTCSCGCEENSTESTCLDPTAPISNTVGENDDNPSVQCTPHMCPIQVNWHIKENYKEYWRVEITITNYNCLVNYTDWSLIVQHPNFDNLTQSLGFNYKSISTNELLNDTTLLWGVKTYDNLLMEAGRNSGDVHAELLFHKHKYFSLSNGWAFPWRVYFNGDNCAMPPPGVYPHDNPLTDIGSKQEVSLFINVLVLVVLIVII 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01952 419 PANTHER PROTEIN COBRA 4 395 IPR006918 GO:0010215|GO:0016020
Trre11g01952 419 Pfam COBRA-like protein 37 192 IPR006918 GO:0010215|GO:0016020
Trre11g01952 419 PIRSF COBRA 1 419 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01952 Trre-Chr11 19718872 19726552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01952 4 418 COBRA Gene Family AT3G02210 51.168 2.14e-157 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01952 - - pop:7480590 483.026