Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01948 ATGGATAATGCTGATCAAGTTGTCCAGCATGTTTTAGATTGTTACAGTTATTACCGTTATGTGATCGGCCTTGGTGATTATGCAGCTTTAGCCGCAGTTCGGAATGAACTTGGACACTTTACTGAACCGATGATAGCAAGATCCAGGACTCCTGGACCTATACCAGGAGTCCATGTAGGGGATCAATTCAGTTATCGATCTCAGATATTTCTGGTCGGAATGCATGACAATTTAGTTCGCGGTATTTCGTTAGGAAGCACTCTTTTTGGACTTGCAGATCGTGATGTAGCCACGTGCTGTGTGGCTGTCTTTGAGCTACATAATTTTTTTGCTCCAGACGATAGCGCGGTCACTTATGGTGGCGAGGGGGGGCATTTAAATTTGGCCAATCAAATGAATCTACGGGTATTAACCCATCAACAATGGACAAGGGGGAATAGAGCATTGTGGAGTTGTCACTTATGTGATTCGGAAGTACGTGTTATAGCACAAAGATTGGTGATGGAAGGCACTCGTGAATACGTATATATCGGACGATTTCAAGTGGTCGATATGGATGTTATCTTGTATAACAATTTGCAAGTCTATCAATATCAATTAACTCGGGTTGACATAAATGCTTTAGATTAA 630 0.419 MDNADQVVQHVLDCYSYYRYVIGLGDYAALAAVRNELGHFTEPMIARSRTPGPIPGVHVGDQFSYRSQIFLVGMHDNLVRGISLGSTLFGLADRDVATCCVAVFELHNFFAPDDSAVTYGGEGGHLNLANQMNLRVLTHQQWTRGNRALWSCHLCDSEVRVIAQRLVMEGTREYVYIGRFQVVDMDVILYNNLQVYQYQLTRVDINALD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01948 209 Gene3D - 37 207 IPR036987 -
Trre11g01948 209 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 48 184 - -
Trre11g01948 209 SUPERFAMILY PUA domain-like 45 204 IPR015947 -
Trre11g01948 209 Pfam SAD/SRA domain 52 204 IPR003105 -
Trre11g01948 209 ProSiteProfiles YDG domain profile. 52 202 IPR003105 -
Trre11g01948 209 SMART G9a_1 47 206 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01948 Trre-Chr11 19578097 19578726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01948 49 182 Su(var)3-9 homologs AT5G04940 29.630 1.63e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01948 - K11420 bvg:104886295 67.781