Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01940 ATGACACTAATAACACATGCATATATATTGGATTTTGATCCTTCCTCCATGTATGTATTGTCAGGTACTGGAACGTTGGTTTCGTTGTCATTTTTGTTTGGATTTGAAGAAGGAAATACTCCACACGTGATTGACAGTTATTACCGTTATGTGATCGGCCTTGGTGATTATGCAGCTTTAGCCGCAGTTCGGAATGAACTTGGACACTTTACTGAACCGATGATAGCAAGATCCAGGACTCCTGGACCTATACCAGGAGTCCATGTAGGGGATCAATTCAGTTATCGATCTCAGATATTTCTGGTCGGAATGCATGACAATTTAGTTCGCGGTATTTCGTTAGGAAGCACTCTTTTTGGACTTGCAGATCGTGATGTAGCCACGTGCTGTGTGGCTGTCTTTGAGCTACATAATTTTTTTGCTCCAGACGATAGCGCGGTCACTTATGGTGGCGAGGGGGGGCATTTAAATTTGGCCAATCAAATGAATCTACGGGTATTAACCCATCAACAATGGACAAGGGGGAATAGAGCATTGTGGAGTTGTCACTTATGTGATTCGGAAGTACGTGTTATAGCACAAAGATTGGTGATGGAAGGCACTCGTGAATACGTATATATCGGACGATTTCAAGTGGTCGATATGGATGTTATCTTGTATAACAATTTGCAAGTCTATCAATATCAATTAACTCGGGTTGACATAAATGCTTTAGATTAA 720 0.4125 MTLITHAYILDFDPSSMYVLSGTGTLVSLSFLFGFEEGNTPHVIDSYYRYVIGLGDYAALAAVRNELGHFTEPMIARSRTPGPIPGVHVGDQFSYRSQIFLVGMHDNLVRGISLGSTLFGLADRDVATCCVAVFELHNFFAPDDSAVTYGGEGGHLNLANQMNLRVLTHQQWTRGNRALWSCHLCDSEVRVIAQRLVMEGTREYVYIGRFQVVDMDVILYNNLQVYQYQLTRVDINALD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01940 239 SUPERFAMILY PUA domain-like 75 234 IPR015947 -
Trre11g01940 239 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 78 214 - -
Trre11g01940 239 SMART G9a_1 77 236 IPR003105 -
Trre11g01940 239 Pfam SAD/SRA domain 82 234 IPR003105 -
Trre11g01940 239 Gene3D - 67 237 IPR036987 -
Trre11g01940 239 ProSiteProfiles YDG domain profile. 82 232 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01940 Trre-Chr11 19482167 19484664 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01940 78 233 Su(var)3-9 homologs AT5G04940 27.848 2.21e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01940 - K11420 bvg:104886295 67.781