Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01927 ATGCCACAGATTGAAGTTCCTGATCTTTCACTTCAAATTAGTTTACCAAATAGTTCTCCTTCATCAATTTGCACAAATGAAGTTGATGATTTAGATTCACCTAATTTTGATATATGGAAAAATAATATTAATGATTCTACTACACCTCATAGTGATGATTTTTCAACTTCAATCAATCTTCAAAAAACAGATACAAAACTTTCATTAACAACAATTCCTTGTGAAGATGAGAGTCATTGGAAGAGAAAAGAATTTGGTAGATTAAGACCCTTTAATGGAATCCCTCTTTATAGTGATAACAATCCTTCAATAATAGAGAAAGATTCAAACTTTTCTCTATATCCTTCTTGTTCTTCTAATTCTTCAACTTTTTATGGTCATAGTGGTTTTGAGGGTATTAAGGGAATTTCAAGGTTTAATGGTATAACTATTGAGAGTTTAAGACCTCAGAAGTTTCAATACTTGAATCAACAAAATCATCATCATGTTCTACAACATCAACAACATCAGAAGAATGAGTTAGGGAATATGGGCAATTCTGATTTTGGAAATGGATTTGTGAGGTCAAGAATGATTATGCCAAGGCAACAAAGTAATAAAAGGAACATGAGGGCTCCGAGAATGCGATGGACTAGTTCGCTTCACAATCGATTCGTTCACGCCGTTGAGCTTCTCGGCGGCCACGAAAGAGCTACTCCAAAGTCAGTTTTGGAGCTAATGGATGTGAAAGATCTAACACTAGCTCATGTCAAGAGCCATTTGCAGATGTATAGAACTGTTAAAAATACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGAATTTCATGTCCCTAACACCACCTCATAATCAAAATAAGAACTATAATGCATCTCTAGATCATGATATTGGACACACTACAAACAATTTATGGGCTAATTCTTCTTCAAGTAAAGAAACATGGACACAAGCTAGTTCCAGAGATTTTGATGAGCTTAGTACACATGAAATCCTATCATCTCAAAACACTGGGAACCTTCCTCAGGGAAGCTTCAAGGATCAAACCATAGATTGTCAGAAGAATCCAAACTTGGAGTTCACCTTAGGGAGATCAAATTAA 1101 0.3542 MPQIEVPDLSLQISLPNSSPSSICTNEVDDLDSPNFDIWKNNINDSTTPHSDDFSTSINLQKTDTKLSLTTIPCEDESHWKRKEFGRLRPFNGIPLYSDNNPSIIEKDSNFSLYPSCSSNSSTFYGHSGFEGIKGISRFNGITIESLRPQKFQYLNQQNHHHVLQHQQHQKNELGNMGNSDFGNGFVRSRMIMPRQQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDENFMSLTPPHNQNKNYNASLDHDIGHTTNNLWANSSSSKETWTQASSRDFDELSTHEILSSQNTGNLPQGSFKDQTIDCQKNPNLEFTLGRSN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01927 366 FunFam Myb family transcription factor 204 262 - -
Trre11g01927 366 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 7 365 IPR044847 GO:0000976|GO:0006355|GO:0010158
Trre11g01927 366 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Trre11g01927 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Trre11g01927 366 SUPERFAMILY Homeodomain-like 203 260 IPR009057 -
Trre11g01927 366 Gene3D - 205 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01927 Trre-Chr11 19297732 19305566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01927 185 364 G2-like Transcription Factor Family AT5G16560 53.659 7.00e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre11g01927 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01927 - - cam:101493712 467.233