Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01915 ATGGAAGGAGGAGGAATGTTATCACCATCTTCATCTTCATCACATTCACAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCAAGCCTCGGAAGCTACGCTACCGACGGCTGCGGAGAATTCACGTTCGATGACACCTCACCATCGGCTGCAAACAGCCTCCAATGTGCAGCCTGCGGCTGTCACCGGAACTTTCATCGCAAAATAACCGCAATTGTGAGGGAGAACGCCGCCATCACAATGTCGGATCAGGTGATGGAATATTCCGGTGGAGGAGGTAGCGGTGGAGACGGGAGGAGGAAGAGGTACCGGACAAAATTCACGGCGGATCAGAAAGAAAAGATGTTGGGATTTGCTGATAAGTTAGGATGGAAATTGCAGAGAAAAGAACTTGATGAAGAGATTGAAAGGTTTTGTGAAAGTGTTGGTGTGAGTAGACAAGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTCTTCTGACCCTTCTACTGGTAATGCTAATTCCTCTCTTACTCAGTAG 534 0.4551 MEGGGMLSPSSSSSHSQNYIYRECLRNHAASLGSYATDGCGEFTFDDTSPSAANSLQCAACGCHRNFHRKITAIVRENAAITMSDQVMEYSGGGGSGGDGRRKRYRTKFTADQKEKMLGFADKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCSSDPSTGNANSSLTQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01915 177 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 70 IPR006456 -
Trre11g01915 177 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 160 - -
Trre11g01915 177 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Trre11g01915 177 SUPERFAMILY Homeodomain-like 89 160 IPR009057 -
Trre11g01915 177 FunFam Zinc-finger homeodomain protein 2 93 164 - -
Trre11g01915 177 Gene3D - 88 165 - -
Trre11g01915 177 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 71 IPR006456 -
Trre11g01915 177 NCBIfam homeobox domain, ZF-HD class 102 160 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01915 Trre-Chr11 19144442 19144975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01915 19 168 ZF-HD Transcription Factor Family AT5G65410 39.362 6.34e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre11g01915 ZF-HD_dimer 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01915 - - cmo:103504587 231.876