Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01914 ATGGATGGAGATAATGCTCTTAACATAACCAATTGGGGATACTATGAACCCGTTTCGTCTTTTAAGAGTCATCTTGGGTTACAACTGATGCCATCGATGCCGGAAAAGCCTCTACTTGGAGGTCACAATGCTGCGGTTTTGTCGGGTTCTAACGGTGCATTTCGCCATAGGGATATTGGGATGCCACAAACTACATACCCTATGGAGTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAGTATATGAATATGAATATGATACCTACTAACCCTCCGGGTTATAGTAATATTCCCGAGACATCTTCGGCTCATCATATTCAAATGATTCGGCCTCCTGAATTAGTTAAGGAAGAAAGGCCAATGGAGGAGGCTCCTGTGGTTGAGAAGTCGAATGGAACCGGTAAGAAGAGGCAAGGGCCGAAGGTGCCTAAATCTCCCAAGGCAAAGAAACCTAAGCGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCGAGGGCTCCAAAGAAAACTACTGAAATTGCAATTAACGGGATTGATTTGGATATTTCGAGTATTCCAATTCCTGTTTGTTCGTGCACAGGAACACCTCAACAGTGTTATAGATGGGGATCGGGTGGGTGGCAATCTGCATGTTGCACAACAGCTATATCAATATATCCTTTACCTATGAGTACTAAACGGCGCGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTCTTAGAGAAACTTGCGGCCGAGGGTTATAACTTTTCTAATCCAATTGATTTGAGGACTTACTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG 864 0.4398 MDGDNALNITNWGYYEPVSSFKSHLGLQLMPSMPEKPLLGGHNAAVLSGSNGAFRHRDIGMPQTTYPMEYMRDAWISSQRDNKYMNMNMIPTNPPGYSNIPETSSAHHIQMIRPPELVKEERPMEEAPVVEKSNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAPKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01914 287 PANTHER - 1 287 IPR010409 -
Trre11g01914 287 Pfam GAGA binding protein-like family 1 287 IPR010409 -
Trre11g01914 287 SMART GAGA_bind_2 1 287 IPR010409 -
Trre11g01914 287 MobiDBLite consensus disorder prediction 117 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01914 Trre-Chr11 19122602 19123465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01914 1 287 BBR or BPC Transcription factor family AT2G01930 51.505 7.12e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trre11g01914 GAGA_bind 4.5e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01914 - - mtr:120575876 540.421