Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01910 ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACTAATAAAAGGAAAAGAAGACCCGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTATTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGGAGAAGGCATAAGGTACCATGGAAGTTATTGAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGCTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGAGTTTTATTGAGCATCAAGATGCTTGTAACATGGGCAGGATCCATAATTCAGAATCTCAACCATTACAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAACTTTACCACATATCCATGGCAAACAAGGCTTCAAGTCATGCAAAAATCAACAAAAGAATCAACAATTTTCATGAACCCTATTACTCCTCTTACTACTATTACACCTCCTTCTCAAACCTTATCCAAGAACAATAAACTTCTATATCCAAACTTGGAACTTCAACTCTCCACCACAAACAACACCAACGCCATCATGTCTCTGGCACCAGACACACCTTCAATAAGAAGTATCAGTGCTGCAGAGGCTATTCAGAAGGTTAATCGGTCAACTCAGTTGCATCTTTCAATTGGTTCATCAAATATGAGTGATAAAAATGAATCAAGTAATAGAAACAACTCAAACTCATCACCTAAAGAGAGTAGCAATAGCAATGAGAAAGTCCAATCAACACCAACAACAAACAACATGGCTTTGGTGAGGGTTCAAGAACAAGCAAAAGAACAATTAAGGATAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAATTCAACAATGCAAAGAGAATTAGACAACAAGCACAAAGTGAACTTGATAAAGCTTATGGATTAAAACAACATGCAATCAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAACTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGTCTTGAGCTATGTTTCTTCGGCTATAACAACTGAAGGTGGTGAAGTAGAAAATGATGATGGAAAAGGCAAAATAACTAACTAA 1419 0.3707 MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPLQTPTACLSRTASSPSPSSETNFTTYPWQTRLQVMQKSTKESTIFMNPITPLTTITPPSQTLSKNNKLLYPNLELQLSTTNNTNAIMSLAPDTPSIRSISAAEAIQKVNRSTQLHLSIGSSNMSDKNESSNRNNSNSSPKESSNSNEKVQSTPTTNNMALVRVQEQAKEQLRIAMAEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIKQINSTMLQITCQTCKQQFQHEDNSLVLSYVSSAITTEGGEVENDDGKGKITN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01910 472 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 380 IPR031140 -
Trre11g01910 472 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Trre11g01910 472 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Trre11g01910 472 Gene3D Classic Zinc Finger 36 98 - -
Trre11g01910 472 SMART c2h2final6 135 162 IPR013087 -
Trre11g01910 472 SMART c2h2final6 58 80 IPR013087 -
Trre11g01910 472 SMART c2h2final6 99 129 IPR013087 -
Trre11g01910 472 Coils Coil 359 407 - -
Trre11g01910 472 MobiDBLite consensus disorder prediction 1 45 - -
Trre11g01910 472 MobiDBLite consensus disorder prediction 312 353 - -
Trre11g01910 472 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trre11g01910 472 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g01910 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Trre11g01910 472 FunFam protein indeterminate-domain 12-like 37 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01910 Trre-Chr11 19092217 19095566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01910 351 463 C2H2 Transcription Factor Family AT2G01940 50.413 9.85e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g01910 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01910 K25871 - gmx:100785333 668.307