Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01881 ATGAGTTCTGGTGACAAAAAATCTCTTCTTGACTACGACAATCTCATACCGTCCAAGGGTGATTTGAGCGAAGGAACTTTTAAGGTGAGGGTTTTGAAAAAATGGCTCGTGTACGATGTGGTTGTTCCTGGAAAGATCATCTCCGTGGATATGATTTTAAAGGATAATAATGGTCACCAAATCGTTGCCTCCATTCCCGAATCTTTGCGTTCTGTGTTCGATTTGCATGATCAGGTGTTGGAGTTCAACTGTCGAACTGCTCTTAAGTTGTTCTGGGCTTATGGAATGCCTCATCCTGGCGATTCGTTTGCTCCTTCTGATCATTCTGATAGGATGGATCACAGTCTTAATTATATGTTGAATGTTTTTGGAGTTGTTACTTATATCAGACACCACAAAACTTTTTTTCTGAATGGTTCTACCACAAAGACTCTGAATTTGAAACTGACTGATAACAGTGAATGTAGTAATACTTTTGAAGTTGTGCTCTCTGGAGATTTAGTTGATCAATTTCGTGATGAGGTGGAAAACATTCCAATGGGTTTGCCTTTAATTGCTTTGCAACGTGCAAGAGTTTATGAAACCCAAGGCAAAACTGTGATCCAGAGCGTTCATGGTGTTACTAAGCTCTTTGTTAATCCTCAGTTCAGTGAGGCCAAAAAGTTTAGGAAGAGTCTTGTGCTTGCCTTGAACAAAACTCAGAAAAAGTTTGGCATTCTTCCATGTGAGAAACCCATGGTCTTCAACTTAGAAACCCCTTACCAGTTTAAATCAATTGCTCAGCTCAAGGGTGATTCAAAGTTTGGTATCTTTGTTGTTAGTGCAAGACTTGCTGACATGTCTGCTGTAAATGCTTGGTGGTACCCAGTTTGCCATTGTGATGCTATCATTGAGTCTTATATTGGTTCTTTTTTATGTCATAAGTGTCATGCTACTGATTTTGAACCAATGCGCAAGTATAGGGCAAAACTGGTTATTCAGGATGAAAGTGGCACTCTCCAGCTCGAATCATTTGATGATGTTCTACTCCCTGTTGCTACTTATAATCCTAAGAAGCCGGGCATTCCAAGGTATTATTTCCCAAGGGCCTTTGATCACATTACCGGAAAGAAGATCATTTACATGATTGAGAAGAAGAAACAAAGTCCTGCCAGCAACAATGAAGTGTATGAGCTTCTTTGTCTATCTGATGATCAGAAAGTTATTGATCATTTTCTTCAAACTTCAAAGATGGTTTCAAACATTATGGATGCAAATTGTGATTTAATCAAGACAGCCATGTTTGAATCCACCCTGTCCACCACTGAGCGTAGCTTTTCTAACTATGTGGTTCCCATTGCTGCTAGAAGTTCAAAGTCTGAGGCTGGTGAGAGTTCAACCTCTGGACCTAAAATGTCATGCATTACAGACGTTCTTTCAAGATCTGTTCGTGCTAGGGTCCGGCGTTAG 1449 0.401 MSSGDKKSLLDYDNLIPSKGDLSEGTFKVRVLKKWLVYDVVVPGKIISVDMILKDNNGHQIVASIPESLRSVFDLHDQVLEFNCRTALKLFWAYGMPHPGDSFAPSDHSDRMDHSLNYMLNVFGVVTYIRHHKTFFLNGSTTKTLNLKLTDNSECSNTFEVVLSGDLVDQFRDEVENIPMGLPLIALQRARVYETQGKTVIQSVHGVTKLFVNPQFSEAKKFRKSLVLALNKTQKKFGILPCEKPMVFNLETPYQFKSIAQLKGDSKFGIFVVSARLADMSAVNAWWYPVCHCDAIIESYIGSFLCHKCHATDFEPMRKYRAKLVIQDESGTLQLESFDDVLLPVATYNPKKPGIPRYYFPRAFDHITGKKIIYMIEKKKQSPASNNEVYELLCLSDDQKVIDHFLQTSKMVSNIMDANCDLIKTAMFESTLSTTERSFSNYVVPIAARSSKSEAGESSTSGPKMSCITDVLSRSVRARVRR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01881 482 Gene3D - 249 394 IPR012340 -
Trre11g01881 482 CDD RPA1_DBD_B_like 121 226 - -
Trre11g01881 482 Gene3D - 102 227 IPR012340 -
Trre11g01881 482 SUPERFAMILY Nucleic acid-binding proteins 254 346 IPR012340 -
Trre11g01881 482 SUPERFAMILY Nucleic acid-binding proteins 115 226 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01881 Trre-Chr11 18616954 18619134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01881 117 341 Core DNA Replication Machinery Family AT4G19130 25.000 5.78e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01881 - K23354 tpra:123922259 360.918