Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01879 ATGGTGCTGATTGATGATAAGGGTGCCAAGATTCATGCTTCTATTAAGAAGCAGTTGTTGTATATGTTTGATTCCAAGATTGTTGAAGTTCAGGGTGAAGACTGGTGGTACCCAGCCTGCAAGTGTCATAAGGCTGTGCTTCCTGATTCTGGTGCTTACTACTGCAATGGATGCTCCCGACATGTTTTCCAATGCATCCCTAGGTTCAGGGTTAAGGTTGAGGTATCAGACGGTGATTCGACATCTGTTTTTGTTCTTTTTGATTCTGACATGAGTTATATACTCGAGAAAGCATGTGCTCATTTTGTTGGAAAAGCAAAGGTTCCCAATGGAGGTTCCGCCCCGCCTGAGTTTGATTCATTGATTGGCTCTGAGGGCCCTTTCAACACTCCTGTAAAGCCAATGTCTCAGGCTATTGAAATTAACTTTGATGATGATTTGGATGATGTTGACATTGTGCAAGATACTCAGCCTCTGTCTTTCCTGAAAGACATTATTGTCACTCCCCCTATTGATGCTAAGACCTCAGCTGAAGAGGATCCTTTGTTGTCTTCTGTGAAGAGAAACTTGGTGGATCAGTTTGATGGCGTTTCTAAGGTTGAAGTGAAGAGGCCTATAAGGCGTGTTAAGGTTAAAATCGAGAAGGAGTAG 651 0.4301 MVLIDDKGAKIHASIKKQLLYMFDSKIVEVQGEDWWYPACKCHKAVLPDSGAYYCNGCSRHVFQCIPRFRVKVEVSDGDSTSVFVLFDSDMSYILEKACAHFVGKAKVPNGGSAPPEFDSLIGSEGPFNTPVKPMSQAIEINFDDDLDDVDIVQDTQPLSFLKDIIVTPPIDAKTSAEEDPLLSSVKRNLVDQFDGVSKVEVKRPIRRVKVKIEKE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01879 216 SUPERFAMILY Nucleic acid-binding proteins 21 129 IPR012340 -
Trre11g01879 216 Gene3D - 7 157 IPR012340 -
Trre11g01879 216 Pfam Replication factor-A C terminal domain 23 97 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01879 Trre-Chr11 18609890 18612039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01879 36 129 Core DNA Replication Machinery Family AT5G61000 30.928 3.74e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01879 - - tpra:123893691 207.223