Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01873 ATGGCAGAAACAAATTCAGTTGAAGGGATTTTGGATTTTTTGAAGAGGAACCGGTTCACGCGAGCTGAAGCAGCTTTGCGGAGTGAGCTCAATAACACTTCTGATGTAAACGGATTCCTTCAGAAGCTTACATTGGAAGAAAAGAACTTGTGTGATGTGTCGCAGAATGATAAGGGGAAGCTCGTGGTAGAAAATCGAGGGTCGGATTCTCGTGATAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATTGAGTGTGGGACTGGTAGAAATACTACCGAGAGCAAGTGGAAACATGCCACTCCGGCTGAGGAAAGGAATAAATCTAATGAAGTTGTTGGAACGAGTGGAACAAATTTCACTTTCTTGAAGAGTTCAGAGGACAGTGTGTTTGATTTACACTCATGGAAGATCAATGGTCCTGCGGAGCCATACCAAATTGATGGTGGAAGCAAGGCTAATAATACTTCAAAGGTCTCAGTATCTCAGCAATCAAAAACTCAAACGAGTGAAGCCTTTGATGCAGTCAAAAGTAATGTAAAAAGCACGGAGGAAAATAACGTTCCCACTGAGAAAAAACCCTCGTGGCTTGGAAGTAGTGGTAAAACCTCTATGGAACCAAAGTTTAACGTTGTCCAAAACAAAGAATCTAAGGAAATTGATCGGCAGCAGCTTAAATTAAGTAGTTCATCACTTAAAGAGAACTTGGCAGATAACGTCTTGTCAAGAGATGACGAGAATGCAAATTCATCTTCTGACGTATGGAAAGATTGTTCCATCAAGACTGTTTTCCCTTTCTCAAAGGGGGATGTGTCTACGAGCTATAATAGCTCAAATTATTCAGAAAAAGTAGATGAAAAGAGAAAGCCAGAAATCAGTGATGCGAGGGCTTATATAAAAGAGCAGGTGGATGAAGTGGGGAGGGCTTTTTACTTGGGGAAGTTGCAAGGCAGTTCTGAACAGAATAACATCGGGAGTGTAAGTTTTCCTCTTGCATTGGAGAAGCAAAAGGAAGAGTATCCAAGGCTTCCTCCTGTGAAAATTAAGTCAGAAGACAAGCCATTAACTATTAATTGGAGTGAGAAGTTTGAATCTGATGGATTGGCTGCGAAGCTCGCTAGTGCTGACAGTAACTTACTTATCGGATCATATCTGGATGTTCCTATTGGACAAGAAATAAAAAATGCAGGTTTGAGGAAGGCTACAGGGGGCAGTTGGCTGTCAGTTAGTCAAGGAATATCGGAGGATACCTCTGATCTTGTATCAGGTTTTGCTACAGTTGGTGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGACGACGACGATGTTGGGTACATGAGACAACCCATTGAGGATGAGGCCTGGTTTTTGGCGCACGAAATCGATTACCCTAGTGACAATGAAAAGGGGACCGGGCATGGAAGCGGTCCAGATCCTCAGGAAAGAGGTCCTACCAAAGATGACGATGACGATCAGTCTTTCGCTGAAGAGGATTCTTATTTCTCTGGAGAGCAATATCTTCAAGCAAAGAATGTTGAGCCGGTCACAGGTTCGGATGATCCTATCGGCATAACGGTTACTAATATGTATGGAAGGGCTAATGGTAATGATTTAATGGCTCAATATGATGGAGAATTGATGGATGTAGAAGAACTGAATCTGATGCATGCAGAACCTGTCTGGCAGGGCTTTGTTCCTCAGACGAATGATCTAATCATGTTGGGAGATGGAAAAGTTCTGAATCACAGTGGAAGATCACGAATTGAGGAAATGGAAGATGATCAACATGGTTCAGTTAGGTCAATCGGGGTGGGTTTCAACAGTGATGCTGCCGATATCGGCAGTGATGTACATGGAAGTTTTATTGGTGGTAGCAGTGAAGGGGATTTAGAATATTTCCGTGATCGCGATAGCGGACTTGGGGGATCCAAACACTCTCATCGTGATTTCGGCAAGAATTCTATGGATAAACCATTCAAAAATAAGAAGAAAAATGACGAGATTGAGTCAAATAAATATGTCATTGGAGGCCATAAAGATGCACAGTCACAAACAAAAACACATGCTGATGGTAACTTTTCATTTCCACAATCTCTTAAAGATAGCCAGATGATTCAGGGTGGTTCCAGTAAGTCGACATGGTTAAATAATTGTAATGCAGATGAAACCGATGACTGCATTAATGCTTTTGAGGAATCTGATGAAATGCTTTCTTCGTGGAGGCAGAAGAGTAGTGATTCTTCACCCGAGAAAAGTTCTAGGGATGAGAATAATGCTCATGCGGTTAGATCCTCAAACTCTTCTCCAACTACTGTCGATAATTACGGGTACGCTGATAAAGAGCATGTCAAGCATGAAAAGGATGATGAAGAGGTTGACATTACAAGGGAAGATGATTTAGGCGTATCACAGGAGGATGAAGAGATTGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGATTTGAGGAGGACAAGAATTTCCATGTTGTTCTAAATTCTGTAATAGCTGGCCGCTATCATGTCACCGAGTATCTGGGATCTGCTGCATTTAGTAAAGCTATACAAGCTCATGATCTGCACACAGGTGTCGATGTTTGTATTAAAATTATAAAGAACAACAAGGATTTCTTTGATCAAAGTCTTGATGAGATCAAACTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTTTGCGATTATATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAACTACTCAAAGCCAATTTATACGAGTTTCATAAATTCAACAGAGAATCTGGAGGGGAAGTGTACTTCACAATGCCGAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAGTATTTACATGGCCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAAAGCTATAGCCGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCATATGTTCAGTCCAGGTCCTATCGTGCTCCCGAGGTTATTCTAGGGCTTTCATATGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACCGGAAATGTTTTATTCCAAAATGATTCCCCGGCAACATTACTTGCTAGGGTAATTGGGATCATCGGTCCAATCGGTCAAAGTATGCTAGCAAAAGGACGGGATACATACAAGTACTTCACAAAAAATCACATGCTATATGAGAGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCGAAAAAGACATCCTTGAGGCATAGGTTACCGATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCATTTGCTCGAGGTTAACCCAAAGAAGCGACCTTCTGCATCCGAGGCTCTAAAGCACCCGTGGTTATCATACCCTTATGAACCGATATCATCTTGA 3549 0.4122 MAETNSVEGILDFLKRNRFTRAEAALRSELNNTSDVNGFLQKLTLEEKNLCDVSQNDKGKLVVENRGSDSRDSVEVSKELIVKEIECGTGRNTTESKWKHATPAEERNKSNEVVGTSGTNFTFLKSSEDSVFDLHSWKINGPAEPYQIDGGSKANNTSKVSVSQQSKTQTSEAFDAVKSNVKSTEENNVPTEKKPSWLGSSGKTSMEPKFNVVQNKESKEIDRQQLKLSSSSLKENLADNVLSRDDENANSSSDVWKDCSIKTVFPFSKGDVSTSYNSSNYSEKVDEKRKPEISDARAYIKEQVDEVGRAFYLGKLQGSSEQNNIGSVSFPLALEKQKEEYPRLPPVKIKSEDKPLTINWSEKFESDGLAAKLASADSNLLIGSYLDVPIGQEIKNAGLRKATGGSWLSVSQGISEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSGPDPQERGPTKDDDDDQSFAEEDSYFSGEQYLQAKNVEPVTGSDDPIGITVTNMYGRANGNDLMAQYDGELMDVEELNLMHAEPVWQGFVPQTNDLIMLGDGKVLNHSGRSRIEEMEDDQHGSVRSIGVGFNSDAADIGSDVHGSFIGGSSEGDLEYFRDRDSGLGGSKHSHRDFGKNSMDKPFKNKKKNDEIESNKYVIGGHKDAQSQTKTHADGNFSFPQSLKDSQMIQGGSSKSTWLNNCNADETDDCINAFEESDEMLSSWRQKSSDSSPEKSSRDENNAHAVRSSNSSPTTVDNYGYADKEHVKHEKDDEEVDITREDDLGVSQEDEEIAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGVDVCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQYLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIGQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01873 1182 FunFam Serine/threonine-protein kinase ppk15 950 1174 - -
Trre11g01873 1182 FunFam Putative serine/threonine-protein kinase dyrk2 865 952 - -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 145 207 - -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 92 113 - -
Trre11g01873 1182 Gene3D Transferase(Phosphotransferase) domain 1 925 1173 - -
Trre11g01873 1182 SUPERFAMILY Protein kinase-like (PK-like) 860 1175 IPR011009 -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 647 685 - -
Trre11g01873 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Trre11g01873 1182 SMART serkin_6 871 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01873 1182 MobiDBLite consensus disorder prediction 647 720 - -
Trre11g01873 1182 Gene3D Phosphorylase Kinase; domain 1 865 952 - -
Trre11g01873 1182 PANTHER DUAL SPECIFICITY PROTEIN KINASE 407 1173 - -
Trre11g01873 1182 ProSiteProfiles Protein kinase domain profile. 871 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01873 1182 MobiDBLite consensus disorder prediction 688 720 - -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 150 207 - -
Trre11g01873 1182 Pfam Protein kinase domain 871 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01873 1182 MobiDBLite consensus disorder prediction 788 802 - -
Trre11g01873 1182 Coils Coil 813 843 - -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 748 805 - -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 474 531 - -
Trre11g01873 1182 CDD PKc_DYRK_like 871 1173 - -
Trre11g01873 1182 MobiDBLite consensus disorder prediction 770 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01873 Trre-Chr11 18542062 18549909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01873 870 1168 MAP Kinase Gene Family AT5G19010 31.975 1.66e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Trre11g01873 Pkinase 4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01873 - - mtr:25496682 2196.78