Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01866 ATGTGTAGTAGAGGTCATTGGAGACCATCTGAGGATGAGAAGCTTAGAGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTACGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGGATAAACAGAAGTCCTTTCACGGAGGAAGAAGAGGAGCGTCTTATAACTTCACATCGGATTCATGGTAATAGATGGGCTGTAATCGCAAGACACTTCCCCGGACGAACCGATAATGCGGTAAAGAATCATTGGCATGTGATGATGGCGAGAATGCGCCGAGAAAGGTATAAGATCTATGCAAAAGGTCCTCTTGATCATCACATATTTTTCTCTCCAAATGGTCATCAACCAAACTTTGAGAGAACAAATCTCCATTCTTTTGTTGAGAAGTATCATGAAAAGCCTAATTACCCTTGTGTCTCAGCTAACCCTTTCAAATTTCCCAAGTTTCTTCGCTTTCAAGATCCAAGTTCTTGTTCCATAATGCTTCAAGATAAAACTCAATCAGTTGAGTTCTATGATTTTCTTCAATTGGATTCCAATAAAAGTGAATTAACCGATATTGCTAGAAAAGATGATGAAGAAGTCAATCAAGATGTTGTGGAACTGCAGAACAAGGAAAAGGAAAACAATGTTCCATTCATTGATTTTTTGTCTTCTGGAAGCTGCTAA 711 0.3938 MCSRGHWRPSEDEKLRELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARMRRERYKIYAKGPLDHHIFFSPNGHQPNFERTNLHSFVEKYHEKPNYPCVSANPFKFPKFLRFQDPSSCSIMLQDKTQSVEFYDFLQLDSNKSELTDIARKDDEEVNQDVVELQNKEKENNVPFIDFLSSGSC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01866 236 PANTHER MYB PROTEIN-RELATED 4 192 - -
Trre11g01866 236 SMART sant 3 52 IPR001005 -
Trre11g01866 236 SMART sant 55 103 IPR001005 -
Trre11g01866 236 FunFam MYB transcription factor 4 55 - -
Trre11g01866 236 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Trre11g01866 236 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Trre11g01866 236 Gene3D - 57 120 - -
Trre11g01866 236 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Trre11g01866 236 Gene3D - 4 55 - -
Trre11g01866 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Trre11g01866 236 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Trre11g01866 236 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Trre11g01866 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Trre11g01866 236 CDD SANT 7 48 IPR001005 -
Trre11g01866 236 CDD SANT 58 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01866 Trre-Chr11 18457008 18460320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01866 1 235 MYB Transcription Factor Family AT1G17950 53.755 3.76e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g01866 Myb_DNA-bind_6 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01866 K09422 - gmx:100811746 330.872