Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01859 ATGAATGCTACAACAAAGAAGAAAATCCAGAAGAAGTGCAAAATCCGAGGCTACAATATCAAAATCGAAGCTCTTGACGAGATTATCTCTTTTGCTGCTCGCTTTGAACCCGCCGAACAAGATGAAGCCATCGATCTCCTCCTCGATGGACTCGAAAACGAATCTTTGAAATCTACTATAATCGACTTGGAGCCGGTGCAACGAGCGGTGAATCTGTTACTGGAAGCCGACGCAGAGGAGGAAATTAATAATAACTTCGCTTCATCTTCTTCTTCCGCCATTGCTGTGATTAATGTGTTCGACATTCCTAGATATAAATATGATGCTATCAGAAGGAATTTCTACCAACACCCAGGAAGCTTACCTGTACATGGGGACCCGCAAGCAAAATCCGCACTGTACAGGGATAGGTTTTTGTTGTTATCTCAGAGACTTTCTCGTCACCAGGATTTTTCGAGGCCGGCTTTTGAGTCCGAACTTTCACAATTCCGGAGCTGTGAGATATCTCCTATTCAATCTCTGGTTGGACAAAAAGGTAGAAGATGGGTAATGGGAGTAATTTCTCAGCTGGAGGATGGCCATTTTTATTTGGAAGACCTTACTGCTTCAGTTGAAATCAATTTATCTGATGCTAAGATTACTACAGGATTCTTCTTAGAGAATACCATAGTTGTGGCCGAAGGCGAGATGCTCGCAGAGGGTATTTTTAAGATTTTTACATGTGGGTTTCCACCATTAGAGGACAGAGATAAATCACTTCAAGTGCTTGCAGGGCATGACTTTTTTGGTGGTGGTACTTTTACAAAAGAAGAAACGATTAGGATGGAAGAAATGGAGAAAAGAGCAGTCAATGACATGTTTGTCATATTATCTGATATTTGGTTAGACAAAGAAGAGGCTATAGGAAAGATAGAGATTGTTCTTGATGGTTTTGAGTGTGTGGAAATGGTTCCTTCCTTATTTGTTTTTATGGGAGACTTCTGTTCTCAACCATGTAGCCTTGCATTTAAATCTTATTCGAGCCTAAGGTCCCAATTTGGCAAGCTAGGGCAAATTATTGCTGCCCGTCCACGGTTAAAAGAGAACAGCCGATTTCTTTTTATTCCAGGTCCTGGTGATGCAGTTCCTTCGACAGGTCTTCCCAAGTGTCCTCTACCTAAATATTTAGTTGAGGAGCTCCAAAAGTATATTCCCGGTGCCATATTCTCAAGCAACCCCTGCAGGGTGAAATTCTATACCCAAGAAATTGTATTTTTCCGCCAGGATCAGCTGTATACAATGCGCCGTTCTTGTTTAATGCCACCTTCTGAGACAGAAACTGTTGATCCTTTTCAGCATCTTGTTGCCACCATAACTCATCAGAGTCATCTATGTCCATTCCCTCTAACTAAAGAACCCATCGCATGGAATTATGACCATTCCCTTCATTTATATCCAACTCCGCACACGATAGTTTTAGGAGACAGAAGTCCGCAGAAAGCTTTTAAGTACACAGGAATCACTTGTTTCAATACTGGATCCTTCTCGATGGATAGCACATTTGTAGTATACCGTCCTTGCAATCAGGAAGTTGAATTGTCATCATTGTGA 1590 0.4164 MNATTKKKIQKKCKIRGYNIKIEALDEIISFAARFEPAEQDEAIDLLLDGLENESLKSTIIDLEPVQRAVNLLLEADAEEEINNNFASSSSSAIAVINVFDIPRYKYDAIRRNFYQHPGSLPVHGDPQAKSALYRDRFLLLSQRLSRHQDFSRPAFESELSQFRSCEISPIQSLVGQKGRRWVMGVISQLEDGHFYLEDLTASVEINLSDAKITTGFFLENTIVVAEGEMLAEGIFKIFTCGFPPLEDRDKSLQVLAGHDFFGGGTFTKEETIRMEEMEKRAVNDMFVILSDIWLDKEEAIGKIEIVLDGFECVEMVPSLFVFMGDFCSQPCSLAFKSYSSLRSQFGKLGQIIAARPRLKENSRFLFIPGPGDAVPSTGLPKCPLPKYLVEELQKYIPGAIFSSNPCRVKFYTQEIVFFRQDQLYTMRRSCLMPPSETETVDPFQHLVATITHQSHLCPFPLTKEPIAWNYDHSLHLYPTPHTIVLGDRSPQKAFKYTGITCFNTGSFSMDSTFVVYRPCNQEVELSSL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01859 529 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 529 IPR016266 GO:0003677|GO:0006261|GO:0008622
Trre11g01859 529 Pfam DNA polymerases epsilon N terminal 5 71 IPR024639 -
Trre11g01859 529 Gene3D - 2 72 - -
Trre11g01859 529 Pfam DNA polymerase alpha/epsilon subunit B 287 492 IPR007185 GO:0003677|GO:0006260
Trre11g01859 529 PIRSF DNA_pol_epsilon_2 1 529 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01859 Trre-Chr11 18391514 18396054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01859 16 498 Core DNA Replication Machinery Family AT5G22110 64.876 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01859 K02325 - jre:109012089 801.971