Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01856 ATGACCGAGTTTGGGAAAGATGAAGTGCCAATTCTGTCAGATACTATTCCAAAACAATCAAATGAGCCCGATGATTCCAAATTCCACGGTCATGTATCTAGGACGCGAAGTGTATCGATTTCGATTCCCATGTTTCCTACGGATCCATATGAAAGAGATACTAATCTTAGAGGGCACACTGGTCCTCTAAGAAGTAAAAGAAAAACACCATTTAGTCCAATGAGTGGTCCATTATATGTTACGCATAGACCCGGAGGAAATCTTCCCTGGCAGAATATTGTCGCGCCGAGGAGCAATGCAGTGGAAAGTAAGACAGAAAAATTTCCTTTGTGTAACATCATGAGTGGACATGATTTGCAGAATAACTATGCTAGCAAAAATGAACATTTAGTAAGGTCTGGTCCATTGGGAATGTGTAATGATCCATACTGTACAACTTGTCCAACTTACTTTAAGGCTACTCAACAAATGGATTCGAAAAATTCGGGTTTGTTCAATCCTAAGAATGCCTTCTATGGTGATGCAAAGGATTGGGCAAGAAGAATTTTTGCTTTCTTTATTCCAAATGTACCTAGAGTTATGAATCCACATAATAAACTTGTACAACAATGGAATAAATTTTTCGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTATTCTTGCTCTCTGTGAATAAGGAACATAAATGTATTGTTATTGATTCGACGATGACGACAGCGCTTATTTTACTTAGAAGTACGAATGATTTCATACATTTAATAAATATTATTCTTCAGTTTAGGTTGGCTTATGTAGCTCCTGAGTCTAGGGTGGTTGGTGCCGGAGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTATCTCCAGACATATTTTCTTTTTGACTTATTTGTTGTACTTCCACTTCCTCAGATAATGATATTGTTTTTCCTACCAAAACACTCGGGAAATTCAGGAGCAAATCATGCAAAGAATCTTTTGCGTGGCGCCGTCCTTGCTCAGTACATTCCCAGATTGTGTAGATTTCTTCCTATGCTAATTTCTCCGACCGGATTCATATTTGAGTCGGCATGGGCAAGTTTCTTCATAAATCTTTTTACCTTTATGCTATCTGGCCATGTTGTTGGGTCATGGTGGTATCTCTTCGGTTTGCAGAGGGTTAACCAATGTCTACGAAATGCGTGCAAGAAAACATATTTTCATGGATGCTCAAAACTCATTGATTGTGGACATGGAAGCAGTGAGGACTATCATCAAAATGAAACAAATTGGATTAATTGGAGTAAAAATGACAATGCAAGTGCTTGTTTTACAGAAAATGGTTTTGAATATGGGATCTATCTTAAAGCTGTCAACCTAACTACAGAACATAATGTGCTGACAAGATATGTATATTCATCATTTTGGGGATTTCAGCAAATTAGCACTCTAGCTGGAAATTTGTCACCAAGCTATTTTATTTGGGAAGTCCTTTTTGTTATGGGAATAATTGGATTAGGACTCTTGCTTTTTGCTCTTCTCATTGGTAACATACAAAACTTTCTTCAGGCTCTTGGAAGAAGGAGGCTAGAAATGTCACTTAGACAACGCGATGTTGAGCAATGGATGAGCCATAGGCGCTTAGCACAAGATGTAAGAAGGAGAGTGCGACAAGCAGAACGTTATAATTGGGCTGCAACGAGAGGAGTGAATGAGGAAATACTAATGGAGAATTTACCAGAAGATCTTCAGAGGGACATCAGACGTCATCTCTTTAACTTTGTTAAGAAGGTTCGAATTTTTTCCTTGATGGATGAGCCGATATTGGATGCCATTTGTGAGAGACTTAGACAAAAAATATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGCTTGGTAGAGAAAGTGGTTTTTGTTGTTCGCGGAAAATTGGAAAGTATTGGTGAAGATGGAATTAGAGTTCCTCTATCTGAAGGCAATGTTTGTGGTGAAGAACTTCTGACATGGTGTCTTGAACATGCTTCAGGAAACAAAGGTTATGGAAAAACAAGAATTCCAAGACAAAGGTTGGTAATTAGCAATAGGACAGTATTGTGCCTAACAAATGTGGAGGCATTTTCAATTAGAGCAGCGGACCTTGAAGAAGTTACAAGCATTTTTGCAAGATTCTTGAGGAATCCTGGTGTTCAAGGAGCCATAAGGTTTATCAAATTAATCTGTCACTTGGCTAATCTCTACTTCGTTTCCAAATGA 2250 0.3809 MTEFGKDEVPILSDTIPKQSNEPDDSKFHGHVSRTRSVSISIPMFPTDPYERDTNLRGHTGPLRSKRKTPFSPMSGPLYVTHRPGGNLPWQNIVAPRSNAVESKTEKFPLCNIMSGHDLQNNYASKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQMDSKNSGLFNPKNAFYGDAKDWARRIFAFFIPNVPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFLFLLSVNKEHKCIVIDSTMTTALILLRSTNDFIHLINIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTYFLFDLFVVLPLPQIMILFFLPKHSGNSGANHAKNLLRGAVLAQYIPRLCRFLPMLISPTGFIFESAWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKKTYFHGCSKLIDCGHGSSEDYHQNETNWINWSKNDNASACFTENGFEYGIYLKAVNLTTEHNVLTRYVYSSFWGFQQISTLAGNLSPSYFIWEVLFVMGIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLAQDVRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFNFVKKVRIFSLMDEPILDAICERLRQKIYIKGSKILYDGGLVEKVVFVVRGKLESIGEDGIRVPLSEGNVCGEELLTWCLEHASGNKGYGKTRIPRQRLVISNRTVLCLTNVEAFSIRAADLEEVTSIFARFLRNPGVQGAIRFIKLICHLANLYFVSK 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01856 749 CDD CAP_ED 598 715 IPR000595 -
Trre11g01856 749 Gene3D - 205 523 - -
Trre11g01856 749 SUPERFAMILY cAMP-binding domain-like 526 722 IPR018490 -
Trre11g01856 749 Gene3D Helix hairpin bin 526 590 - -
Trre11g01856 749 ProSiteProfiles cAMP/cGMP binding motif profile. 598 666 IPR000595 -
Trre11g01856 749 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 139 725 - -
Trre11g01856 749 Gene3D Jelly Rolls 596 721 IPR014710 -
Trre11g01856 749 MobiDBLite consensus disorder prediction 1 83 - -
Trre11g01856 749 SUPERFAMILY Voltage-gated potassium channels 196 526 - -
Trre11g01856 749 Pfam Ion transport protein 206 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01856 Trre-Chr11 18349248 18356942 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01856 7 678 Ion Channels AT3G17700 60.176 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01856 K05391 - gmx:100795955 1135.94