Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01842 ATGGAGTCATATGAGAAAGAAACTAGTCTAAAAAAAGAACATGTTGGTGCACTCTGTAGTGTAGTTGTGATAGGAAACAAAGTAGAGAATTTCAAGAAAGAAAAAGTTTATCCTTTTCATGTCACATGTGATGGAGAAAATGAACATTTAGGGAAGTCTGGAGCATTAGGAATGTGTGATGATCCTTATTGTACTACTTGTCCTACTTACTTCAAGGCTTATCAACAAAGTAATCCAAAAGATTCAACTGAATATGATTCCACGGTATCTGACACGTGTCACACTACACCGAAAATGATTCTCAATTTCGTGTGGGAAGTCGTTTTCGCAATTTCCATCATAGGATTGGGACTCTTGCTTTTTGCACTTCTTATTGGAAACATACAAAACTTTCTTCAAGGTCTTGGAAGAAGTGAAGCTCTGATGTTTTTAGTCCTTGGTGGTGTAACAATGAAAATGATATATTTTTCAATTTGCCGGAAATATAAAAGGAAATATAGTGAAGCTCTTGTAAATTTGCCGGAAGATCTTCAGATTGACATTAGGCGTCATCTTTTCAATTTTATTAAGAAAATTCGGGTTTTCTCTCTGATGGATGAACCTATTTTAGATGCAATTTGTGAGAGACTAAGACAGAAAGACATACATAAATGGAAGTAG 660 0.35 MESYEKETSLKKEHVGALCSVVVIGNKVENFKKEKVYPFHVTCDGENEHLGKSGALGMCDDPYCTTCPTYFKAYQQSNPKDSTEYDSTVSDTCHTTPKMILNFVWEVVFAISIIGLGLLLFALLIGNIQNFLQGLGRSEALMFLVLGGVTMKMIYFSICRKYKRKYSEALVNLPEDLQIDIRRHLFNFIKKIRVFSLMDEPILDAICERLRQKDIHKWK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01842 219 Gene3D Jelly Rolls 163 217 IPR014710 -
Trre11g01842 219 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 102 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01842 Trre-Chr11 18116856 18117926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01842 103 213 Ion Channels AT3G17700 51.181 6.94e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01842 K05391 - gmx:100795955 118.627