Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01832 ATGAGGCAGTTTGTATGCAACAAACATGGGTACAGAGATAAGAAACACTTGTGCAAGATAGATATGAAAAGAGAGCATAAACGTTTGACCCGTACTGGTTGCGCTTCTAGGCTTCGTGTGCAATACAAACCCAAAAAGGATAGATATGTAGTGTCAATATTTGAAGAGGGTCATAACCATGAATTAACCCCTTCTAAGCGTTGTGGCAGATGCGAAAGTACAACTCATAATGCGAGGAGTTGTTCGGTTGCAAAAAAAGCACCAGTTGGAAAAAATGTTAAATTAGATTCAGTGTCATTAACTGATTCTGTAAACCAAACTGAGAAGAACAAGAAAAGAAAAACAAGTTGCAAGGGTGAACCAAGCGTGCAAAAGAATTGTTCAGATGGACTGCAAAATCATGGCGATAATGTTACAATGAGACAAATCCCTTCAATGTATGCAGTTCAACCTATGATGTTTGTGATACATCCGGGAGGTCATCCGATGCAAGTGCAACCCGTGTATCCAATATATGGAATGCCCGTTGGTGAAAATTCAAATTCGTGCTTCGGTCTCCTACAACAAGTGATGAAATCTGCTGTTAAAGAATGA 594 0.3956 MRQFVCNKHGYRDKKHLCKIDMKREHKRLTRTGCASRLRVQYKPKKDRYVVSIFEEGHNHELTPSKRCGRCESTTHNARSCSVAKKAPVGKNVKLDSVSLTDSVNQTEKNKKRKTSCKGEPSVQKNCSDGLQNHGDNVTMRQIPSMYAVQPMMFVIHPGGHPMQVQPVYPIYGMPVGENSNSCFGLLQQVMKSAVKE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01832 197 MobiDBLite consensus disorder prediction 102 134 - -
Trre11g01832 197 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Trre11g01832 197 MobiDBLite consensus disorder prediction 120 134 - -
Trre11g01832 197 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01832 Trre-Chr11 18008095 18010501 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g01832 FAR1 3.9e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01832 - - tpra:123910027 124.02