Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01827 ATGGCGTCGGATGAGGAAATAACGGGATCCATAAAAAGAAAGATTAAGCACAAGGAGCGACCCGACCAGGCCAAGAAGCAACAGGTTGCATATTACCCTGACAATTTGATGTTCCAAACATCAATTGGTTCCACATTTGGGGCTGCTGATGCACTACTTCATCCGCGAGCTAAGAACTTGCGCGGATTAAGCGATTCTCAGGCATTAGGGAATAGGGATACAAATGCTGATGCTATTAATGCATTGGTTAACTATTGTCCAAATTTGACCGATATCGGGTTCATCGACTGCCTGAGTGTTGACAAGCTTGCATTGGGAAATGTGCAATCGATTCGCTTTCTTTCTGTTGCGGGGACACCAAGTATGAAGTGGAGTGTGATTTCACATCTGTGGCATAAGCTTCCTAACCCGATTTGGCTTGAATGGATGTTATCACATGTCCTTTTGCGTTCTGCTGAGAGCCCTCAACAGGAAGGTCTTGATAATTTCTGGGTTGAACAAGGTGCATCACGCTTGCTTAGTCTAATGCAGAGTACTCAAGAGGATGTTCAGGAGAGGGCCGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATTCATTGTGGAAGGGCGGAAGCAGTTATGCGAGATGGTGGCATACGCCTCCTTCTTGGCCTTGCAAAATCTTGCTGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCTATTGCGAATTTGTCCGTGAATGCCAATGTGGCGAAGGCGGTTGAAGAAGAGGGTGGGATTGAGATTCTTGCTAGTTTGGCTAGGTCAATGAACAAACTGGTGGCTGAAGAAGCTGCTGGAAGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAGTGCAAGCATTAATGGATCTTATATTCAAGTGGTCCTCTACCGGAGATGGAGTTTTAGAACGTGCAGATGGTGCATTGGCTGCTGACGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGCGTACACGCTCTAGTGATGCTTCCGCGTAACTGCAAATACGAGATTCTTATTAGGAATGTTGTTGCTGTTGGCTGTGCTGATGGAAAGATTCATGTTCACAACATCCGTTATGATCAAGAGTTGGTTAAATTTACGCATGCCACGCGTTGTTCTGTCACTGCTTTATCTTTCAGCACTGATGGACAGCCCCTTCTGGCTTCTGGAGGTTCATCTGGTGTTATAAGCATATGGAATCTCGAAAAGAAAAGGCTCCACTCAGTTGTAAGAGAGGCTCATGATGGTGTGATAACTTCACAACATTTTTTCGCTAATGAGCCAGTGCTAATGAGTTCATCGGCAGACAACTCTATTAAAATGTGGATTTTTGACACAAGTGATGGTGACCCTCGCCTTTTGCGCTTTCGAAGTGGGCATAGTGCTCCTCCCCTCTACATAAAGTTTTATGCCAATGGAAGACATTTTCTTTCTGCTGGCCAGGATCGAGCCTTTCGCCTTTTCTCTGTTGCACAGACTAACGAATGCACACAGTCGTGTTGTGGAGTGGAGACTAGATGTAGAAGGTTGAGGATACCATTTTGGAAAATGGTTGAAGACTTTCGGAACTGTTTTCCTTTGCCAAAGAGCTTGTGTTGTGCCATCAGTGCTTGTGGCAATTTTGCCATTTTAGGGACAGCTGGTGGTTGGATCGAAAAATTCAACCTTCAATCAAGAATTCACAGGGGTGTTTACATTGACATGTCAGAATCAAGAAGTTGTGCTCATGATAGTGAAATGGTTGGAGTTGCTTGTCTCCTGGATACAGTAGCGGATGATTTAACAATTAGATTGTTTGATGTTGTGGCTCTCAGACTTGTTCGTAAATTCGAAGGTCACCCAGATCGTATAACAGAGTTGTGCTTCAGTGAGGATGGGGAGTGGCTTCTATCATCTAGTATGGATGGAAGTCTTAGAATTTGGGATGTGATCCTATCACGGCGTTATCACTGTCACCAAACATGGATATATTAG 2028 0.4492 MASDEEITGSIKRKIKHKERPDQAKKQQVAYYPDNLMFQTSIGSTFGAADALLHPRAKNLRGLSDSQALGNRDTNADAINALVNYCPNLTDIGFIDCLSVDKLALGNVQSIRFLSVAGTPSMKWSVISHLWHKLPNPIWLEWMLSHVLLRSAESPQQEGLDNFWVEQGASRLLSLMQSTQEDVQERAATGLATFVVIDDENASIHCGRAEAVMRDGGIRLLLGLAKSCWEGLQSEAAKAIANLSVNANVAKAVEEEGGIEILASLARSMNKLVAEEAAGRLWNLSVGEEHKGAIAEAGGVQALMDLIFKWSSTGDGVLERADGALAADDKCSTEVALAGGVHALVMLPRNCKYEILIRNVVAVGCADGKIHVHNIRYDQELVKFTHATRCSVTALSFSTDGQPLLASGGSSGVISIWNLEKKRLHSVVREAHDGVITSQHFFANEPVLMSSSADNSIKMWIFDTSDGDPRLLRFRSGHSAPPLYIKFYANGRHFLSAGQDRAFRLFSVAQTNECTQSCCGVETRCRRLRIPFWKMVEDFRNCFPLPKSLCCAISACGNFAILGTAGGWIEKFNLQSRIHRGVYIDMSESRSCAHDSEMVGVACLLDTVADDLTIRLFDVVALRLVRKFEGHPDRITELCFSEDGEWLLSSSMDGSLRIWDVILSRRYHCHQTWIY 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01827 675 ProSitePatterns Trp-Asp (WD) repeats signature. 647 661 IPR019775 -
Trre11g01827 675 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Trre11g01827 675 PRINTS G protein beta WD-40 repeat signature 647 661 IPR020472 -
Trre11g01827 675 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Trre11g01827 675 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 257 299 IPR000225 GO:0005515
Trre11g01827 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 460 IPR001680 GO:0005515
Trre11g01827 675 SUPERFAMILY ARM repeat 158 326 IPR016024 -
Trre11g01827 675 SUPERFAMILY WD40 repeat-like 359 661 IPR036322 GO:0005515
Trre11g01827 675 Gene3D - 359 468 IPR015943 GO:0005515
Trre11g01827 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 628 661 IPR001680 GO:0005515
Trre11g01827 675 Gene3D - 269 358 IPR011989 -
Trre11g01827 675 Gene3D - 146 268 IPR011989 -
Trre11g01827 675 SMART WD40_4 621 660 IPR001680 GO:0005515
Trre11g01827 675 SMART WD40_4 421 461 IPR001680 GO:0005515
Trre11g01827 675 SMART WD40_4 378 418 IPR001680 GO:0005515
Trre11g01827 675 SMART WD40_4 468 507 IPR001680 GO:0005515
Trre11g01827 675 SMART WD40_4 328 374 IPR001680 GO:0005515
Trre11g01827 675 Gene3D - 606 674 IPR015943 GO:0005515
Trre11g01827 675 Gene3D - 470 605 IPR015943 GO:0005515
Trre11g01827 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 628 661 - -
Trre11g01827 675 Pfam WD domain, G-beta repeat 624 660 IPR001680 GO:0005515
Trre11g01827 675 Pfam WD domain, G-beta repeat 385 418 IPR001680 GO:0005515
Trre11g01827 675 Pfam WD domain, G-beta repeat 430 460 IPR001680 GO:0005515
Trre11g01827 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 429 460 - -
Trre11g01827 675 PANTHER PROTEIN ARABIDILLO 1 70 136 - -
Trre11g01827 675 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g01827 675 MobiDBLite consensus disorder prediction 7 25 - -
Trre11g01827 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 427 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01827 Trre-Chr11 17923293 17929345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01827 172 369 U-box Gene Family AT5G67340 29.208 4.88e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01827 - K14554 gmx:100798946 441.81