Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01826 ATGCTGCTGCTTGGTATGAAGCAGGATCAAGTTGACGGCACAAAGTCCACTTTCAATGGCGCATTTAGTAAGTGCAATTCTAAAGGTGGATCGCAATCTGAGAATGTGGCGAAGTCGCAGGATATACCTTCTGTTGCAAACAACCTTACTCCCAAGGTGAGGAAACCGTATACCATCACTAAACAAAGGGAGAAATGGACTGATGAAGAGCATCAGAAGTTTCTCGAGGCTTTGAAATTGTATGGTCGAGGGTGGCGTCAAATTGAAGAACATATAGGATCCAAAACGGCAGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGATGGCATTGCTGAAAGCTCTATTCAGCCAATTGACATACCTCCTCCCCGGCCGAAAAGGAAACCCCTTCATCCATACCCTCGGAAATCCATCGACTCTTTCAAAGGACAGTCGGCTCCGAATGAATCAGAGACATCTCCATCCATTAACCTGTCAGTTGCAGAAAACGACACCCAATCTCCAACCTCCGTACTATCTGCACATGGTTCTGAAGCATTCGGCTCAGCAGCATTTTCTGAGCAGACTAATAGATGTCTTTCTCCAAATTCTTGCACCACCGAGATTCACCCGGTCAGCTTGTCACCTGTTGAAAAAGAAAATGATAGCCAGACATCCAAACCGTCCGAGGAGGAAGAGAAAGGGTCTCCTCCAGCTTTGGTTCCTCTATCAACCAACTCAAAACCACTTATGTGCTTGAAGTCCGAGATGATTTCTTCGGAGGAAACACAATGTTTCAAAGAAGATGCTGCAAATACGCCACACGTCACTTGTATTAAGCTGTTCGGTAGAACAGTCTCTATGGTAGGTACTGAGAAGTCAATAAATGATGATGACGAAAACATTAAGCCAGTAGCTATCAAATCTGATGAAATCGTTGAAAACGAAAAGATTGGCCAAGAAGAGGTATCAGAGCAGCTAGATACACAATTATCACTAAGCACATGTAGTGGTAATTTGCATGTAACACCTGATGGAGTTCAAGTAAGAAGCACTGAACAACCGAAGGAGAATCTATACATCAGCGATTGTGCAGCAGCATCTTTACCATTGTGGAGTTTGTACCAAGGCCTTCCATCATTCAACCTCAAACCATGCAATCATGAGATTATTAATCCTGTACCTCTTAGACCCTCTTTGAAGATAAGAACAAGAGAGGAAGAAAGTTCTTGCACTGGTTCAAATACTGAATCAGTTTTTGATATGGAAAATCAAAGCAAGAATAACTCATCATCGGATACCGATGATTCTCAAAGTCAAAAACATCATCAAGAAAGTGTAGTAATTAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGTTGGATTGGAAGAAAGAGAAGGACAAAGAGCTCGTGTGTGTTCATAG 1467 0.4206 MLLLGMKQDQVDGTKSTFNGAFSKCNSKGGSQSENVAKSQDIPSVANNLTPKVRKPYTITKQREKWTDEEHQKFLEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGIAESSIQPIDIPPPRPKRKPLHPYPRKSIDSFKGQSAPNESETSPSINLSVAENDTQSPTSVLSAHGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPVEKENDSQTSKPSEEEEKGSPPALVPLSTNSKPLMCLKSEMISSEETQCFKEDAANTPHVTCIKLFGRTVSMVGTEKSINDDDENIKPVAIKSDEIVENEKIGQEEVSEQLDTQLSLSTCSGNLHVTPDGVQVRSTEQPKENLYISDCAAASLPLWSLYQGLPSFNLKPCNHEIINPVPLRPSLKIRTREEESSCTGSNTESVFDMENQSKNNSSSDTDDSQSQKHHQESVVIKKSGRGFVPYKRCLAERDENSLIVGLEEREGQRARVCS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01826 488 SMART sant 62 110 IPR001005 -
Trre11g01826 488 CDD SANT 65 108 IPR001005 -
Trre11g01826 488 MobiDBLite consensus disorder prediction 412 436 - -
Trre11g01826 488 FunFam protein REVEILLE 6 isoform X1 65 113 - -
Trre11g01826 488 MobiDBLite consensus disorder prediction 119 163 - -
Trre11g01826 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Trre11g01826 488 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
Trre11g01826 488 MobiDBLite consensus disorder prediction 149 163 - -
Trre11g01826 488 Gene3D - 65 112 - -
Trre11g01826 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Trre11g01826 488 MobiDBLite consensus disorder prediction 26 49 - -
Trre11g01826 488 MobiDBLite consensus disorder prediction 210 247 - -
Trre11g01826 488 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Trre11g01826 488 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Trre11g01826 488 PANTHER SWI/SNF COMPLEX-RELATED 37 417 - -
Trre11g01826 488 MobiDBLite consensus disorder prediction 405 448 - -
Trre11g01826 488 SUPERFAMILY Homeodomain-like 57 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01826 Trre-Chr11 17908092 17910833 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g01826 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01826 - - gmx:778089 607.446