Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01825 ATGGTTATGGCTAACATTGTTGTTGGAGTAACTTCTCTTCCTCTACCTTCATTAACCTTAACATACTCAAACACTTTCACTCTTAACTCCAAAATTAAGACCCAAAATCATAAATTTTATCTAAATTTCTCCCAAACAAATCACAAAACAACCTCATTTTCATCTTCCTTATTATCATCATCACTTAGAAACAAAAGTAGTAGTTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAACCCTCGTCTTCATCTTCCAGTTCACCTTCAACTAAGCTATATATCAGTGGGCTATCATTTCGTACAACCGAAGAGAGCTTGCGAAATGCATTTAAAAATTTCGGTCAACTTGTTGAAGTTAATCTTGTGATGGATAAAGTTGCGAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACCGAAGAGGAATCGAAGAAAGCTATCGAAGGAATGCATGGGAAGTTCTTGGATGGTAGGGTCATATTTGTTGAAGTTGCTAAACCAAGATCAGAGCTACGGCAGAAATTGAAGCAAAACACTTTGTAG 549 0.3734 MVMANIVVGVTSLPLPSLTLTYSNTFTLNSKIKTQNHKFYLNFSQTNHKTTSFSSSLLSSSLRNKSSSCSVLACLPPASEPSSSSSSSPSTKLYISGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQKLKQNTL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01825 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 162 IPR000504 GO:0003723
Trre11g01825 182 SUPERFAMILY RNA-binding domain, RBD 74 175 IPR035979 GO:0003676
Trre11g01825 182 SMART rrm1_1 92 165 IPR000504 GO:0003723
Trre11g01825 182 Gene3D - 41 180 IPR012677 -
Trre11g01825 182 PANTHER NUCLEOLAR PROTEIN 8 79 175 - -
Trre11g01825 182 SMART rrm2_1 92 165 IPR003954 GO:0003676
Trre11g01825 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01825 Trre-Chr11 17904333 17906603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01825 80 180 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 9.43e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01825 - K13195 gmx:100305561 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01825 11 17904333 17906603 Trre11g01825 11 17904333 17906603 ECH