Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01824 ATGTTTCTCAGTTTCGTAATCAGTGCAGAGGACATGGTTATGGCTAACATTGTTGTTGGAGTAACTTCTCTTCCTCTACCTTCATTAACCTTAACATACTCAAACACTTTCACTCTTAACTCCAAAATTAAGACCCAAAATCATAAATTTTATCTAAATTTCTCCCAAACAAATCACAAAACAACCTCATTTTCATCTTCCTTATTATCATCATCACTTAGAAACAAAAGTAGTAGTTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAACCCTCGTCTTCATCTTCCAGTTCACCTTCAACTAAGCTATATATCAGTGGGCTATCATTTCGTACAACCGAAGAGAGCTTGCGAAATGCATTTAAAAATTTCGGTCAACTTGTTGAAGTTAATCTTGTGATGGATAAAGTTGCGAATAGACCAAGAGGGTTTGCTTTCCTTCGTTATGAAACCGAAGAGGAATCGAAGAAAGCTATCGAAGGAATGCATGGGAAGTTCTTGGATGGTAGGGTCATATTTGTTGAAGTTGCTAAACCAAGATCAGAGCTACGGCAGAAATTGAAGCAAAACACTTTGTAG 582 0.3763 MFLSFVISAEDMVMANIVVGVTSLPLPSLTLTYSNTFTLNSKIKTQNHKFYLNFSQTNHKTTSFSSSLLSSSLRNKSSSCSVLACLPPASEPSSSSSSSPSTKLYISGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFAFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQKLKQNTL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01824 193 Gene3D - 53 191 IPR012677 -
Trre11g01824 193 PANTHER NUCLEOLAR PROTEIN 8 90 186 - -
Trre11g01824 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 173 IPR000504 GO:0003723
Trre11g01824 193 SMART rrm2_1 103 176 IPR003954 GO:0003676
Trre11g01824 193 SUPERFAMILY RNA-binding domain, RBD 85 186 IPR035979 GO:0003676
Trre11g01824 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Trre11g01824 193 SMART rrm1_1 103 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01824 Trre-Chr11 17904300 17906603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01824 91 191 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.39e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01824 - K13195 gmx:100305561 190.66