Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01823 ATGTTTGGTTCTCGACAACGTACTTACATTATGAGCCATATGTTTGCGAATGAGTTGCCAAGGGGACCTTACCAATTGGAATTTGGAGGTCGTTCAACTGAACAACTACAATCCAACCAATGTCCCAAGAAAAGGAGCTATCGCTGCATGTCACAGGAGCAAATAGAAGGACTGGATGCTTTCTTCAAGCTGAATGATCACCCAAATGAGAGTGAAAGAAAAGAGTTGGGTCATTGTCTTGGCTTAGATCCATCACAAATCAAGTTCTGGTTTCAGAACAAGCGCACCAAATTGAAGACCCTAAGTCAAAGAGAAGAGAATAAAACTTTGAAGGCTGAAAATGAAAAACTCCGAGCTGAGAATGCTATGCTTCGAGCTCAGATGAATAGGTCCATGGAGACCAACATGTGTGGACCTCCAACTACCCTGATCATGTCCAATGTACAGCAACAATTGGGGGCTGAGAATACGCTCATAAGACCAAGGATTTTGCAGAATTTGTATTTGGACAGGTTTCGTAATTTTTGA 528 0.4205 MFGSRQRTYIMSHMFANELPRGPYQLEFGGRSTEQLQSNQCPKKRSYRCMSQEQIEGLDAFFKLNDHPNESERKELGHCLGLDPSQIKFWFQNKRTKLKTLSQREENKTLKAENEKLRAENAMLRAQMNRSMETNMCGPPTTLIMSNVQQQLGAENTLIRPRILQNLYLDRFRNF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01823 175 ProSiteProfiles 'Homeobox' domain profile. 41 101 IPR001356 GO:0003677
Trre11g01823 175 SMART HOX_1 43 105 IPR001356 GO:0003677
Trre11g01823 175 Coils Coil 100 134 - -
Trre11g01823 175 Gene3D - 30 119 - -
Trre11g01823 175 SUPERFAMILY Homeodomain-like 31 100 IPR009057 -
Trre11g01823 175 CDD homeodomain 44 99 IPR001356 GO:0003677
Trre11g01823 175 Pfam Homeodomain 44 99 IPR001356 GO:0003677
Trre11g01823 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 43 161 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01823 Trre-Chr11 17897000 17901303 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01823 32 163 Homeobox Transcription Factor Family AT4G04890 44.030 4.70e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre11g01823 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01823 K09338 - gmx:100815499 120.168