Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01821 ATGAGACAAACACTCACAAAACCGTTCCAAACCTCAAAATCGCATTTCAAGTGCAAATCCACTCGTTTCTTCGCCATTGTGATCGGAATCAAGTCGCAAACAACTTCAATCATCAATAACGATGAGTTTATTTCAAAAGAAGGATTAAGCAAACCAACCAACATGTATGGTTCTCGACAACTTCGTAACATTATGAGTCATATGTTCGAGAATGAGTTGCCAAGAGAACCTTACCAACTGGAATCTGGAAGTTCGTCAAGTGAACAACCACAACCCAACCAATGTCCCAAAAAAGGGAGTAATCGCTGCATCACACAAGAGCAAATAGAAGAATTGGATGCTTTCTTCAAGCTGAAAGATCACCCAAATGAGAGTGAAATAAAAGAGTTGGGTCATCGTCTTGGCTTAGATCCTTCACTAGTTAAGTTCTGGTTTCAGAACAAGCGAACCAAATTGAAGACCCTAAGTCAAAGAGAAGAGAATAAAGCTTTGAAGGAGGAAATTGAAAAACTTCGAGCTGAGAATGTTATGCTTCGAGCTCAGATGAATAGGTCCAAGGAGACCAACATGTGTGGACCCCAACTACCCTGA 591 0.4061 MRQTLTKPFQTSKSHFKCKSTRFFAIVIGIKSQTTSIINNDEFISKEGLSKPTNMYGSRQLRNIMSHMFENELPREPYQLESGSSSSEQPQPNQCPKKGSNRCITQEQIEELDAFFKLKDHPNESEIKELGHRLGLDPSLVKFWFQNKRTKLKTLSQREENKALKEEIEKLRAENVMLRAQMNRSKETNMCGPQLP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01821 196 Coils Coil 154 188 - -
Trre11g01821 196 SMART HOX_1 98 159 IPR001356 GO:0003677
Trre11g01821 196 SUPERFAMILY Homeodomain-like 81 154 IPR009057 -
Trre11g01821 196 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Trre11g01821 196 Gene3D - 83 172 - -
Trre11g01821 196 MobiDBLite consensus disorder prediction 78 100 - -
Trre11g01821 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 98 192 IPR042160 -
Trre11g01821 196 CDD homeodomain 98 153 IPR001356 GO:0003677
Trre11g01821 196 Pfam Homeodomain 102 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01821 Trre-Chr11 17885210 17888179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01821 39 193 Homeobox Transcription Factor Family AT1G05230 37.179 2.97e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre11g01821 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01821 K09338 - aew:130761763 107.842