Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g01821 | ATGAGACAAACACTCACAAAACCGTTCCAAACCTCAAAATCGCATTTCAAGTGCAAATCCACTCGTTTCTTCGCCATTGTGATCGGAATCAAGTCGCAAACAACTTCAATCATCAATAACGATGAGTTTATTTCAAAAGAAGGATTAAGCAAACCAACCAACATGTATGGTTCTCGACAACTTCGTAACATTATGAGTCATATGTTCGAGAATGAGTTGCCAAGAGAACCTTACCAACTGGAATCTGGAAGTTCGTCAAGTGAACAACCACAACCCAACCAATGTCCCAAAAAAGGGAGTAATCGCTGCATCACACAAGAGCAAATAGAAGAATTGGATGCTTTCTTCAAGCTGAAAGATCACCCAAATGAGAGTGAAATAAAAGAGTTGGGTCATCGTCTTGGCTTAGATCCTTCACTAGTTAAGTTCTGGTTTCAGAACAAGCGAACCAAATTGAAGACCCTAAGTCAAAGAGAAGAGAATAAAGCTTTGAAGGAGGAAATTGAAAAACTTCGAGCTGAGAATGTTATGCTTCGAGCTCAGATGAATAGGTCCAAGGAGACCAACATGTGTGGACCCCAACTACCCTGA | 591 | 0.4061 | MRQTLTKPFQTSKSHFKCKSTRFFAIVIGIKSQTTSIINNDEFISKEGLSKPTNMYGSRQLRNIMSHMFENELPREPYQLESGSSSSEQPQPNQCPKKGSNRCITQEQIEELDAFFKLKDHPNESEIKELGHRLGLDPSLVKFWFQNKRTKLKTLSQREENKALKEEIEKLRAENVMLRAQMNRSKETNMCGPQLP | 196 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g01821 | 196 | Coils | Coil | 154 | 188 | - | - | |
Trre11g01821 | 196 | SMART | HOX_1 | 98 | 159 | IPR001356 | GO:0003677 | |
Trre11g01821 | 196 | SUPERFAMILY | Homeodomain-like | 81 | 154 | IPR009057 | - | |
Trre11g01821 | 196 | ProSiteProfiles | 'Homeobox' domain profile. | 95 | 155 | IPR001356 | GO:0003677 | |
Trre11g01821 | 196 | Gene3D | - | 83 | 172 | - | - | |
Trre11g01821 | 196 | MobiDBLite | consensus disorder prediction | 78 | 100 | - | - | |
Trre11g01821 | 196 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 98 | 192 | IPR042160 | - | |
Trre11g01821 | 196 | CDD | homeodomain | 98 | 153 | IPR001356 | GO:0003677 | |
Trre11g01821 | 196 | Pfam | Homeodomain | 102 | 153 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g01821 | Trre-Chr11 | 17885210 | 17888179 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g01821 | 39 | 193 | Homeobox Transcription Factor Family | AT1G05230 | 37.179 | 2.97e-21 | 89.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-other | Trre11g01821 | Homeodomain | 1.6e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g01821 | K09338 | - | aew:130761763 | 107.842 |