Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01807 ATGAACGGAAAAGCTTCCGTTTCTAAGGAGCTTCAAGCTAAACATACCAAGATCTTAGAGGGACTTCTTAAGCTAGCTGACAACAGGGAATGTGCAGACTGTTGGACCAAGGCACCACGATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGAGGTCCACAACTTTGGATACATGGTTGCCAGAACAAGTTTCTTTCATGCAATATATGGGTAATGTGAAGTCAAATAAGCACTGGGAAGCTAAACTGCCACCAAATTTTGACAGAAATGAATATGGAATCGAGAAGTTTATCCGTGCCAAATATGTGGAGAAAAGATGGGCTTTACAAGGTGAACTACAATCTTCAAAGTCAGCTGAAATACCGGTTGACTTCAAAGTGTCACAAACTACTGGGGCCAAGAATGGTATTCAAAAAAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAATCACATGGCACAAATTCGGCCTCCAATACCAAAATTTCAAGAGGGTCCCTTAGATTTAAAAATGAAGATTTCACTACCAATAAAGAGGTCATCAACATCACTTGATTTTGATAAATCGAATGGAAATAGCAACGGTACCGCCGATCTTTTTAATTTGCTTTCCTTCGACGACAATAAACAGAATATATCAACTACACCTTCTAGCTGGACAACATTTGATTGTAAGATTACATTACTTGTAATATCTCATCTTCTGAATCTATGTTCTATTTTCTTTGATTCACATGGTTCATGTTATGTACTTGGAAATTATTAA 822 0.3808 MNGKASVSKELQAKHTKILEGLLKLADNRECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQYMGNVKSNKHWEAKLPPNFDRNEYGIEKFIRAKYVEKRWALQGELQSSKSAEIPVDFKVSQTTGAKNGIQKNRRLSLEESILVNHMAQIRPPIPKFQEGPLDLKMKISLPIKRSSTSLDFDKSNGNSNGTADLFNLLSFDDNKQNISTTPSSWTTFDCKITLLVISHLLNLCSIFFDSHGSCYVLGNY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01807 273 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Trre11g01807 273 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 133 IPR001164 GO:0005096
Trre11g01807 273 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Trre11g01807 273 SMART arf_gap_3 5 130 IPR001164 GO:0005096
Trre11g01807 273 CDD ArfGap 19 119 - -
Trre11g01807 273 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Trre11g01807 273 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Trre11g01807 273 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Trre11g01807 273 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Trre11g01807 273 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 242 IPR044520 GO:0005096
Trre11g01807 273 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01807 Trre-Chr11 17626376 17630319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01807 19 119 C2H2 Transcription Factor Family AT4G05330 50.467 2.38e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01807 K12486 - gmx:100802691 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01807 11 17626376 17630319 Trre11g01807 11 17626376 17630319 ECH