Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01803 ATGTCTTCTACCGGCGCCGACGAAAATCCTCATACCGGCGTTAACTCCGACGAACTTCGCCGTTACTTTTGCCACCAGTGCGAACGCACAGCTTTCATTTCCGCTTCATCCACCGATCTAATCTGTCCCAATTGCAACGGTACTTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAATCCCAATCCTCTCCCTCCGTTCTTCTCCCACACCACAACCGATTTCCCCGCCGCAGGATTCTCCTTTCCCCTCCTTTTTCCCGGTGCCGGCGCCGCCACCGCTTCTCAACCATTCAATGATCTATCCGCTTTATTAACGTCTCCGGCACCGCCTTCACCTTTCGGCGAAGCGTTTAACCCTGTCGCGTTTATTCAAAACTACCTCCGCAACATGAATGCCGGAGGTGGCAACGTTCAGTTCTTCATCAACGATGCTGACGATCCGGCGAGACAATTCCGGTTTCCCGGAAACGCTAATCCAGGAGATTATTTCTTTGGACCTGGACTTGAGGATCTGATCCAGCAATTAGCAGAGAATGATCCGAATCGGCGTGGGACACCGCCGGCATCGAAGTCTGCCGTGGAAAAGCTTCCGGTTATTGAAGTTACGGAGGAGCTGCTGGAATCGGATTCATCGCAGTGCGCGGTGTGTAAAGACACATTTGCCCTTGGCGAAAAGGCGAAGCAGATGCCTTATGATCCTGATTATGAACAGAGGGCTTGTGGCGGAGGCGGTGTTGGTGGTGTTGGTGGTGGTGGAGGAGGGGGAGATGATTCAGTGAGAACAAGGTTTAGGGTGTCTTTGCCATTTATGCCGTTGAGGCATGTACCTTCTTCTTCTTCTTCTGGAGCTGCTGCAGGGGCAAAATCGATCCTGTTTCATAATGAGGGGGATGCAGTGACAGGTTTCAGTCCATCTTGTTACAGCTTTATCTATGTATGA 945 0.5143 MSSTGADENPHTGVNSDELRRYFCHQCERTAFISASSTDLICPNCNGTFLEELETPIPNPNPNPLPPFFSHTTTDFPAAGFSFPLLFPGAGAATASQPFNDLSALLTSPAPPSPFGEAFNPVAFIQNYLRNMNAGGGNVQFFINDADDPARQFRFPGNANPGDYFFGPGLEDLIQQLAENDPNRRGTPPASKSAVEKLPVIEVTEELLESDSSQCAVCKDTFALGEKAKQMPYDPDYEQRACGGGGVGGVGGGGGGGDDSVRTRFRVSLPFMPLRHVPSSSSSGAAAGAKSILFHNEGDAVTGFSPSCYSFIYV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01803 314 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01803 Trre-Chr11 17587534 17592865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01803 156 232 C3H Transcription Factor Family AT5G01980 44.156 2.56e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01803 K11982 - gmx:100818686 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01803 11 17587534 17592865 Trre11g01803 11 17587534 17592865 ECH