LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g01793	ATGGGACGAGTCCGAACCAAAACCGTGAAGAAATCCTCTTGTCAAATCATCGAGCGTAACTACCCTAAAATGACACCCGATTTCCACACCAACAAGAAGATCCTCGAAGAAGTCGCTTTGATATCATCAAAGCGTCTTCGTAACAAGATCGCTGGTTTCTCCACTCATCTCATGAAGCGTATTCAAAAGGGACCTGTTCGTGGAATTTCATTGAAGCTGCAAGAGGAGGAGCGTGAGCGTTGTATGGATTTCGTTCCTGATGTTTCTGCTATTAGGACTGATCATATCGAGGTTGATAAGGAAACTCTAGACATGCTTGCTGCTCTTGGTATGTCCGAGATTCTTGGTGTTCACCAGATGCCGTTTGGTCGTGTTGCTGGTGCTGGAAGGAGGTTTTAA	399	0.4536	MGRVRTKTVKKSSCQIIERNYPKMTPDFHTNKKILEEVALISSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERCMDFVPDVSAIRTDHIEVDKETLDMLAALGMSEILGVHQMPFGRVAGAGRRF	132

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g01793	132	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g01793	132	PANTHER	40S RIBOSOMAL PROTEIN S17	1	119	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g01793	132	FunFam	40S ribosomal protein S17	1	62	-	-
	Trre11g01793	132	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g01793	132	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g01793	132	Pfam	Ribosomal S17	1	118	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Trre11g01793	132	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g01793	Trre-Chr11	17499101	17499499	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g01793	1	131	Cytoplasmic Ribosomal Protein Gene Family	AT3G10610	73.571	2.92e-68	200

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g01793	K02962		-	gmx:100785402	209.149