Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01788 ATGACAACAACAAATTTCACCCAATTCTATGACCCATGGTACTCACAATTCAACAACTTAATCCACCAACTCACAATTTTATCAACCCAAACCCAAAATTCAGAAGAACTTATCCAAAAAGTTATGTCCCACTATGAAGACTATTACAAAGCTAAATCAACGGCTGTTGAAAAAGATCCACTCCACGTGTTATCATCTCCATGGGCTACTTCACTTGAACGCTCACTTCATTGGATAGCTGGTTGGAGACCCACCACAGCTTTTCATCTCATATACACTGAATCTTCTCTTCTCTTTGAATCTCACATTGTTGATATTCTTCGTGGGTTTACCACTGGTGACCTTGGTGATCTTTCTCCTAATCAGTTTCGTCGTGTTAGTGACTTGCAATGTGATACTGTGAAAGAAGAGAATGCAATAACTGAGGAGGAGCTATCAGAGTGGCAGGATAGTGCGAGCGATATGATGGGTTCAGACACCGATGTCGACAAGAAGATTGAACGCTTGGTAAGCATTATAAAGAAAGCGGATAATCTACGGCTGAGAACATTGCGGAGCGTGGTGGGGTTCCTGTCACCGCAGCAGGCTATTGAGTTCTTGATTGCTTCAGCTGAGTTGACAGTTGGGATTCGCGGGTGGGGATTGAATCATGACCGTTCGCGTCCTAGGATTTGA 675 0.4326 MTTTNFTQFYDPWYSQFNNLIHQLTILSTQTQNSEELIQKVMSHYEDYYKAKSTAVEKDPLHVLSSPWATSLERSLHWIAGWRPTTAFHLIYTESSLLFESHIVDILRGFTTGDLGDLSPNQFRRVSDLQCDTVKEENAITEEELSEWQDSASDMMGSDTDVDKKIERLVSIIKKADNLRLRTLRSVVGFLSPQQAIEFLIASAELTVGIRGWGLNHDRSRPRI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01788 224 Coils Coil 131 151 - -
Trre11g01788 224 ProSiteProfiles DOG1 domain profile. 3 220 IPR025422 GO:0006351|GO:0043565
Trre11g01788 224 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 5 221 - -
Trre11g01788 224 Pfam Seed dormancy control 29 93 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01788 Trre-Chr11 17451674 17452699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01788 6 217 Calmodulin-binding Proteins AT5G65210 25.108 6.11e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01788 - - gmx:778192 315.849