Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01753 ATGAAAAATTCTTCCTCTACTTCTTTCAACCACGGTTGGACATATGATGTGTTCGTGAGTTTCTACGGAGATGACACTCGTTACGGTTTCACAGGAAACCTTTATAATACCTTGCGCAAAAAGGGAATCAACACTTTCAAAGATGACATCCAACTTAAGAAAGGGAAAGAGATTTCATCAGATCTTCTCCAAGCAATTGATGAATCTAGGATTGCTATAATTGTTTTCTCTGAAAATTATGCATCCTCAACTTGGTGTCTTGAAGAACTTGTCAGGATCATGAAGTGTAAGAAAGAAAAGGGACAATTGGTTCGTCTAGTTTTCTACTATGTTGATCCTTCAAATGTAAGGCATCAGAGGGAAAGTTTTGCAAGGTCAATGGCTAAGCATGAAGAAAATATCAAAATTCGTAAAGAAAAAGTATTTAAGTGGAGAAGGGCACTCTCAAATGCAGCAAATTTATCAGGGTGGCATTTCAAATCTGGGTATGAATACGAATTAATTCAAAAGATCACTGAAGAAATATCTAGGAAATTAAATCTCACCCCTTTACACATAGCTGATCATCCAGTTGGGTTGAACTACAAAATGTCACAAGTGATGTCACTTCTAGAAATCAAGTCTAATAATGATGATGATCGCATGATTGGAATCTGTGGAATTGGTGGTATTGGTAAAACTACACTAGCTAGAGCAGTATATAACTCAATTTCTAGAGAGTTTGATAGTTCAAGCTTTCTTGTTGATGTAAGAGAAAATTCAATGAAACATGGTTTAGTACACTTGCAAGAGACCCTTTTGCTTCATTTGCTTGATGAAAATATCAAGTTGGATGATGTGAGCAAAGGAATTCCTATATTAAAAAGACGGCTTCTCAACAAGAAAGTTCTTTTGATTCTTGATGATGTCGATAATCTTCAACAGTTAAGGTCATTGGTTGGAAGCAATGATTGGTTTGGTTTTGGAAGTAGGATTATCATAACAACGAGAGATAAACATTTGTTAACTGCTCATGGAGTTAAAAAATTGTATGAAGTGAAAGAGCTTAATGAGCATGAATCTCTTGAACTGTTTAGTATGAATGCCTTTAGAAAAAATGTGCCTGATGAAACTTATGTGGAGATAGCAAAAAGTGTAGTGAAATATGCAAAAGGTCATCCATTAGCTTTGAATGTTATTGGATCAGATTTATTTGGCAAAACAATTGAAGAATGGAAAAGTGCATTGAATAAATATGAAACAATTCCAAGCAAAGAGATTCTGAATGTCCTTAAAGTAAGCTATGACAATTTGGATGATAATGAGAAAGAAATTTTCCTTGATATTGCTTGTTTCTTCAAAGGATATCCGAAGGCAGATGTAGAAAAGACGCTAGATGCAAGTCGTTTTTATTCGAAATACGGCATTGGAGTACTTGTTGATAAATCTCTTGTAACAATTGGTGAATCTGATTCAGTAAAGATGCGTGATCTTGTACAAGACCTAGGTAAAGACATTGCTCGAAAGGAATCACCATTTGATCCGAGCAAACGCAGAAGATTATGGCATCATGAGGATGTTGTTGAAGTCTTGACTGGAAACATGGGAACAGATACAATTGAAGGTATTATGTTGGACATGCCTAACTTAAAACAAGAAGTCCAGTTAAAAGCCAACACCTTTGATAATATGAAAAGGCTTAGAATCCTCATAGTTAGGAATGGACAAGTTTCTGGAGCACCACAAAATCTTCCAAATAATTTGAGATTGCTTGAGTGGAACAACTATCCTTTAACATCTCTACCTGATAATTTTCATCCAAAGACACTTGTTGTACTCAATTTGCCAAAGAGTCATATAGCAATGGATGAGCCATTCAAGAATTTTGAGCATTTGACTTTTATGAACTTCAGTGATTGTGACTCTATAACAAAACTACCTGATGTCTCTGCAACTCCAAATCTAACAAGAATTCTTGTTAATAATTGTCCAAACTTGGTAGACATTCATGAATCTGTTGGAGATCTTGACAAGCTAGTCACATTGAGTACTGAAGGATGCCCTAAACTCAAGAGTTTTCCGCGAGGCCTGAGATCAAAATATCTCGAATACCTTAATCTTAGAAAGTGTTCTAACATCGATAGTTTCCCAGATGTATTGGCAAAAGTGGAAAATATGAAAAATATTGACATAGGAGGGACATCCATAAAAAAGTTTCCAAGTTCAATTGGAAACTTCAAAGGCCTTGAAGAATTGGTTTTAACATCATGCACAAATGTTGAGGATCTACCTAGTAACTCAGATATGTTTCAAAATATTGAAGAGCTTAATGTGGAAGGATGTCCACAACTTCCAAAACTTCTATGGAAGTCATTGGAAAACAGGACTACTAATGATTGGTTTCCAAAGTTAAGTAATCTGAGTCTGAAAAATTGTAATCTATCAGATGAAGATCTTGATTTAATTCTCAAATGTTTTCTACAATTAAAGTGGTTGATTCTATCAGATAACAATTTCTTGACCATTCCTGATTGCATTGAAGACCTTTCTCATCTCTTGCTTCTTAACATAGAAAACTGCAAGCATCTTAGAGATATATATGTGCTTCCACCATATTTGCAATATATAGATGCAAGGAATTGTATGGCATTGACTCCTCAATCATCAGAAGTACTATTGAGTCAGGCATTTCAGGAGGTTGAGTACATAGACATAGTTGTTCCAAGGACAAAAGTTCCATCTTGGTTTGATCACTGTAAAAAAGGGGAGTCTATCGCCTTTTGGATTCGTAAAAGTTTCCCTTCAATTGCTCTATTTTTTCTTTTAAGTGGAGATGATGAAAAGAAAACCAATTATACATGTGACTTCTGCATACTAATCAATGGCATACAAGTATTCCAAGGAAGAAGCGAGTGGCCGATTGATCATGCATGGCTATTTGATCTGCGAATTCACCTCACTGCAAGCGAGTGGCAAGGGTTCAATGAACAAATAAAATCTGGTTGGAATCAAGTGGATATTTCATGTTCAGTCATTGATGAATCAAAAACTGTAACTATTAAATGTTGTGGAATTCATCTTTACAAAGATAGAATGAATATCCACCATGTCTCCTTCATAAGCCCTGATCTTCATGACTCAAATATGGTTCATGATAATGAGAGTTTGGAGGATATCTATGATGAAGAAAGAGAAGATGTAGTTTTTCCTACAATATTAGCTAAATATTTTAACAAGACTATATTAGAGGTCATGAGTGATCTTAAATCCAGCAAGAGAAAAGTAGATCATGAATATGACTATGATGAAAAGTTGGAATTAGACAGTGACACTGATATTGACAGCCAGGACATGGAAGAGGAACAACATTCACCTTCCCTTAATCATCAAATCCTAGAAATCTTTGAACTTGTGGATAAAGACAATGAAAAAGATACTAATTCCAGTAAAATCTTCATTGATCCTTCAACTGAAACACAAGAAGAAGCCCTTGTTACAAGTATCCATAACAAGGAGCCAACACTTGCGCAAAAAGAAAAGTTGAAGGAGATTGAAACTTTTAGACCAGAAGCAAGTACCATTGCATCAACAAGAAGAGATAAGGGAACACAATTAGTTGATAAAATCACTTCGGTGGGACAAGTCAATGTTGATTCAATAAAAAGCAAACAACTTATCCTAAATGCAGAAGCCTACATAAACAATGTTGAGTCTACAATAAATGAAGACAATATGGAAGCATTTTATGCCTCACTTGAAGCAGAAAATAATTATCCTTTAATAGTCCAACTCAACAATGAAACTATGGCAAATAGGCCTAGTGAAGAAACTCAGAAAGCATTAAAGATTGTGCAAGACTTTGTCTCAAAAAAATTCTCTCTTTTGTTGCATCCGGGACGTTCGGGATTGCTGAAAGATATTCTAAAGTATCTCATCAGTTTAACACCAAATGAAGGAGTGTCCCTGAAAACAAAATCAGTACTACTGCAACTTTCACATGGTTTTGCTCAATGGAGTTTGGATTACAATAATGCAAATCTTAAAATTGAGTCAGCAACCACAGATCTATCAAAAGTTGAGAAAATGAAGGATTGCCTTGAAAGTAACGTGAAAGACTTCCGAGATATGGACATGGTGGAGAAGTGTTTGTCTAATCAGTTGGCCTGCTTGCAGGAAGAGAAGAGATTACTTGAAGAGAAAATCAATGCTATTAAAGCTGAGATTGAAGATTTCACAGAACAAAGAGAAATGGTTGCTAAGAGAAAGACGGAATTGTTTCACAAAGGAAGCGTGATAAAAGCAGAAAGGGATGATCTAAGGAACCAAGTTCCAAGGTTGAAAGCTGAGAAGGAATTGGCAAAGATAACACAAGCTAATATTGAAGAAGAGTGGTCAAAACTTGGAGAACAATTCATTGGAAGCACCGAAGCACCCATTTTGATGAGTGGGCCTTAG 4434 0.3554 MKNSSSTSFNHGWTYDVFVSFYGDDTRYGFTGNLYNTLRKKGINTFKDDIQLKKGKEISSDLLQAIDESRIAIIVFSENYASSTWCLEELVRIMKCKKEKGQLVRLVFYYVDPSNVRHQRESFARSMAKHEENIKIRKEKVFKWRRALSNAANLSGWHFKSGYEYELIQKITEEISRKLNLTPLHIADHPVGLNYKMSQVMSLLEIKSNNDDDRMIGICGIGGIGKTTLARAVYNSISREFDSSSFLVDVRENSMKHGLVHLQETLLLHLLDENIKLDDVSKGIPILKRRLLNKKVLLILDDVDNLQQLRSLVGSNDWFGFGSRIIITTRDKHLLTAHGVKKLYEVKELNEHESLELFSMNAFRKNVPDETYVEIAKSVVKYAKGHPLALNVIGSDLFGKTIEEWKSALNKYETIPSKEILNVLKVSYDNLDDNEKEIFLDIACFFKGYPKADVEKTLDASRFYSKYGIGVLVDKSLVTIGESDSVKMRDLVQDLGKDIARKESPFDPSKRRRLWHHEDVVEVLTGNMGTDTIEGIMLDMPNLKQEVQLKANTFDNMKRLRILIVRNGQVSGAPQNLPNNLRLLEWNNYPLTSLPDNFHPKTLVVLNLPKSHIAMDEPFKNFEHLTFMNFSDCDSITKLPDVSATPNLTRILVNNCPNLVDIHESVGDLDKLVTLSTEGCPKLKSFPRGLRSKYLEYLNLRKCSNIDSFPDVLAKVENMKNIDIGGTSIKKFPSSIGNFKGLEELVLTSCTNVEDLPSNSDMFQNIEELNVEGCPQLPKLLWKSLENRTTNDWFPKLSNLSLKNCNLSDEDLDLILKCFLQLKWLILSDNNFLTIPDCIEDLSHLLLLNIENCKHLRDIYVLPPYLQYIDARNCMALTPQSSEVLLSQAFQEVEYIDIVVPRTKVPSWFDHCKKGESIAFWIRKSFPSIALFFLLSGDDEKKTNYTCDFCILINGIQVFQGRSEWPIDHAWLFDLRIHLTASEWQGFNEQIKSGWNQVDISCSVIDESKTVTIKCCGIHLYKDRMNIHHVSFISPDLHDSNMVHDNESLEDIYDEEREDVVFPTILAKYFNKTILEVMSDLKSSKRKVDHEYDYDEKLELDSDTDIDSQDMEEEQHSPSLNHQILEIFELVDKDNEKDTNSSKIFIDPSTETQEEALVTSIHNKEPTLAQKEKLKEIETFRPEASTIASTRRDKGTQLVDKITSVGQVNVDSIKSKQLILNAEAYINNVESTINEDNMEAFYASLEAENNYPLIVQLNNETMANRPSEETQKALKIVQDFVSKKFSLLLHPGRSGLLKDILKYLISLTPNEGVSLKTKSVLLQLSHGFAQWSLDYNNANLKIESATTDLSKVEKMKDCLESNVKDFRDMDMVEKCLSNQLACLQEEKRLLEEKINAIKAEIEDFTEQREMVAKRKTELFHKGSVIKAERDDLRNQVPRLKAEKELAKITQANIEEEWSKLGEQFIGSTEAPILMSGP 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01753 1477 SUPERFAMILY "Winged helix" DNA-binding domain 418 524 IPR036390 -
Trre11g01753 1477 Gene3D Ribonuclease Inhibitor 537 693 IPR032675 -
Trre11g01753 1477 Gene3D Ribonuclease Inhibitor 694 924 IPR032675 -
Trre11g01753 1477 Coils Coil 1335 1369 - -
Trre11g01753 1477 Pfam NB-ARC domain 197 427 IPR002182 GO:0043531
Trre11g01753 1477 Gene3D - 348 432 IPR042197 -
Trre11g01753 1477 Pfam TIR domain 15 185 IPR000157 GO:0007165
Trre11g01753 1477 Coils Coil 1429 1449 - -
Trre11g01753 1477 SMART till_3 14 154 IPR000157 GO:0007165
Trre11g01753 1477 Gene3D - 184 344 IPR027417 -
Trre11g01753 1477 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Trre11g01753 1477 SUPERFAMILY L domain-like 549 882 - -
Trre11g01753 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 442 IPR027417 -
Trre11g01753 1477 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 792 IPR044974 GO:0006952
Trre11g01753 1477 Gene3D - 9 183 IPR035897 -
Trre11g01753 1477 SMART AAA_5 212 349 IPR003593 GO:0016887
Trre11g01753 1477 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 181 - -
Trre11g01753 1477 PRINTS Disease resistance protein signature 215 230 - -
Trre11g01753 1477 PRINTS Disease resistance protein signature 383 397 - -
Trre11g01753 1477 PRINTS Disease resistance protein signature 840 856 - -
Trre11g01753 1477 PRINTS Disease resistance protein signature 290 304 - -
Trre11g01753 1477 Coils Coil 1373 1414 - -
Trre11g01753 1477 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01753 Trre-Chr11 17114052 17120299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01753 1 780 WRKY Transcription Factor Family AT4G12020 31.507 1.08e-95 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01753 - - pcin:129293148 1642.48