Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01735 ATGCATGAAAAATCTCCATTATTGCTGGGAAGTGAAAACAGGTTGAGTTTTTGGAGAAGTTTGTTCCAGAATGAATCTGTAAAAGAAAGAGGCAAGCAGAAGGAATCATCCTCAATGGGTTTTCAACCAAATGTTATTAATACAACATTACATAAGATTTCATCTGTCAAAGCCCTGATTGGAAAATTGTCTCTGATTCAAAAAATGACTGGTCAAAAGTCTTCGTCCTGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCATTCACAGAAGGCGGTGATGATTTGGACAATAGAGTAGACATGTCAAAACCTAGCAGAGGATGTTCTGAGGACTTCAAATCATTTGATTCTGTTTCCCTACTTCAGGAGGGACAAGAGAACCTTTATTATTCTCAAGAGAAAATCAACCAAAATGAAATTGGTGTGGATGCATCAGATGACAATCCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATGTTTAGTTCTGTCAAAAGGACTTCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGATGAACTGTTTAGATTTTGTCGAGATTAGCGAAGCTGAAGAACAAATCGAGATTTTGGAAAAGATTGTCCCGGATTGGATTTGCAAGAAGTTGGTTTCTTCTGGAGACACTATGTACTGCGTCAAGAAAGCGGTAAATTTGGAATCAGTTCGATCAAGACTACTCAAAAGAGGCAAGCAGAAGGAATCACCCTCAGTGGGTTTTCAACCAAATGTTATTAATACAACAGTACATAAGATCTCCTCTCCATATTCTGAAAGCCCTGATTGGAAAATTGTCTCTGGTACTGATAGTTTGTTGACACGGACACCTGCACAGTCAGAACCTGAGAGATTGGTGCTTGGTTCTGATGTCAAGCTTAAAAAAATGACTGGTCAAAAATCTACGTCCTGTTTTAAGCCTGCAAAAAGGGTGCTTGACTTTTCACTTACAGAAGGCAGTGATGATTTGGACAATAGAGTAGACATGTCTAAACCTAGCAGAGGATGTTCTGAGGACCTCAAATCATTTGATTCTGTTTCCCTACTTCAGGAGGTACAAGAGAACCTTCATTATTCTCTAGAGAAGATCAACCAAAAGGAAATTGGTTTGGATGCATCGGATGACAATTCTTCATCACTGGTGGAGCTGGTTAATGTGATTGACTCTATATTTAGTTCTGTCAAAAGAATTCCAATCACAAAAGAGTGTTAG 1239 0.385 MHEKSPLLLGSENRLSFWRSLFQNESVKERGKQKESSSMGFQPNVINTTLHKISSVKALIGKLSLIQKMTGQKSSSCFKPAKRVLDFSFTEGGDDLDNRVDMSKPSRGCSEDFKSFDSVSLLQEGQENLYYSQEKINQNEIGVDASDDNPSSLVELVNVIDSMFSSVKRTSITKEELLQKIMMNCLDFVEISEAEEQIEILEKIVPDWICKKLVSSGDTMYCVKKAVNLESVRSRLLKRGKQKESPSVGFQPNVINTTVHKISSPYSESPDWKIVSGTDSLLTRTPAQSEPERLVLGSDVKLKKMTGQKSTSCFKPAKRVLDFSLTEGSDDLDNRVDMSKPSRGCSEDLKSFDSVSLLQEVQENLHYSLEKINQKEIGLDASDDNSSSLVELVNVIDSIFSSVKRIPITKEC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01735 412 Pfam DNA replication factor Cdt1 C-terminal domain 152 209 IPR032054 -
Trre11g01735 412 PANTHER DNA REPLICATION FACTOR CDT1 259 411 IPR045173 GO:0003677|GO:0030174|GO:0071163
Trre11g01735 412 Gene3D - 146 244 IPR038090 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01735 Trre-Chr11 16926907 16931292 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01735 153 246 Core DNA Replication Machinery Family AT2G31270 41.489 2.84e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01735 K10727 - gmx:102670055 204.912