Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01727 ATGGAGATACATGAGATGCATCGACTTAGAAGGTACGATGCTCTTCTTTCGATCAATTCTCCAAAGCATGATGGGGAGTTTAAAGTTAAGGTTATGAAAAAATGGGGTACGAAGGACCTGGTGAGAATGGGGAAAATCGTTTCTGTTGATATGATTTTGGCTGATCAAACCGGTCATAAAATACAAGCAACTATTCCTGAGAAGTTGTGTCCTAGGTTTGACAAGAAGGTTGTGGAGGGTAAAGTTTACATCATGTCAAATTTTACCATTAAGACAAACTTGGGTAATCATTTGGCCAGTTTTCATAGAAATTTATTGGTCTTCAATGATCAAACTAATGTTAAAATTTCTTGGGGGTGTGGTTTTCCATCTCATGGACTTGATTTAATTGGATCTAAAGATGTTCTGAGTCTTAAGGATAAGTTTCAATATTTGATTGATGTTATTGGTGTTATTACATATATCAGGCATGATAAAAATATTTATCTTGATGGAACTACTACAAACACTGTTACTTTGAAGCTCACTGATAACAAGAAATGTAGTTGTACTTTTGAATGTGAGTTGTTTGGAGATTATGTTGAAATATTTCGTGAGCTGATGAAGGATACTGGGTTGGGACTTCCTGTTGTAGCTTTGCAATGGGTGAAAGTGACTAAAAGTCAAGGAAGAAGTGTTGTGCAAAGTGTTGATGGGATTACAAAGATTTATGTTAATCCCACATTTTATGACGCCTGCCAGTTTAGGGAAGGGTTGGTGCTTGAACTTAATCAAAAGCGAAAGACGCTTGGATTTCCTCGTCGTGACAAACCTATTGGTTTCAATTTCGCTACTCATTTCCATTGCAAGAGTATATCTCAGCTTAGGGAAGATCCCACTCTTGGAATCTATCTGATTAATGGTCGTATAATTGAAATGTCTGCCCTTGACACTTGGTGGTATCCAGTTTGTGGCTGTGATTTAATTATTGAGGACTACCTTGGTGCTTTTTTCTGTCGGAAATGCTATGCTACTGATTTTGAACCAACGCTAAAGTATAGAGTTAAAATGGTGGTTGAAGATGAGTCTGGTGTAACATTTTTGGAGGCATTTGATCATGTGATGCTTCCAATTGCTGTCGTCGACCCAACTAGACAGGGTATAACTAGGAGTTATTTCCCTTGTGCATTTGATCATGTTATTGGGAAGAGTATAATGTTTATCGTTGAGAAAAAGAAACATGATCAAGTATATTGTGATGGAATGTTTGAGTTGCTTTGTGTGTCAGGTGATAGGGAGATTATTCAATATTATTTTGACAAGGGGATGTGTTCTACTCCTTCTAAGGAAGTTCCTCCAAATTTGAATAAAGAGAGGAGTTTGTTGAATCAAGTTGCTTATCATCCTCCTAAAACTACAATTACCAAACTGCTCATTAACTATCTCAACCCTATTTCAACAACTTCTCCATATTTTCATGTTGGAGAGAGCTCCAATGCTGCTGCCACCCCTTCTGATGATGATAATTCCAATGTCAGATCAGTTCGTCCTCGCCTTGCTTGA 1542 0.3748 MEIHEMHRLRRYDALLSINSPKHDGEFKVKVMKKWGTKDLVRMGKIVSVDMILADQTGHKIQATIPEKLCPRFDKKVVEGKVYIMSNFTIKTNLGNHLASFHRNLLVFNDQTNVKISWGCGFPSHGLDLIGSKDVLSLKDKFQYLIDVIGVITYIRHDKNIYLDGTTTNTVTLKLTDNKKCSCTFECELFGDYVEIFRELMKDTGLGLPVVALQWVKVTKSQGRSVVQSVDGITKIYVNPTFYDACQFREGLVLELNQKRKTLGFPRRDKPIGFNFATHFHCKSISQLREDPTLGIYLINGRIIEMSALDTWWYPVCGCDLIIEDYLGAFFCRKCYATDFEPTLKYRVKMVVEDESGVTFLEAFDHVMLPIAVVDPTRQGITRSYFPCAFDHVIGKSIMFIVEKKKHDQVYCDGMFELLCVSGDREIIQYYFDKGMCSTPSKEVPPNLNKERSLLNQVAYHPPKTTITKLLINYLNPISTTSPYFHVGESSNAAATPSDDDNSNVRSVRPRLA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01727 513 Gene3D - 277 413 IPR012340 -
Trre11g01727 513 Pfam Domain of unknown function DUF223 51 116 IPR003871 -
Trre11g01727 513 SUPERFAMILY Nucleic acid-binding proteins 143 250 IPR012340 -
Trre11g01727 513 SUPERFAMILY Nucleic acid-binding proteins 283 402 IPR012340 -
Trre11g01727 513 MobiDBLite consensus disorder prediction 491 513 - -
Trre11g01727 513 CDD RPA1_DBD_A_like 28 114 - -
Trre11g01727 513 CDD RPA1_DBD_B_like 147 242 - -
Trre11g01727 513 Gene3D - 12 116 IPR012340 -
Trre11g01727 513 SUPERFAMILY Nucleic acid-binding proteins 24 117 IPR012340 -
Trre11g01727 513 Gene3D - 121 258 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01727 Trre-Chr11 16795867 16798194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01727 6 365 Core DNA Replication Machinery Family AT5G08020 23.057 6.69e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01727 - - tpra:123922259 466.848